Code

add ProteinsX dataset classes#204

Code

Open

a-r-j wants to merge 35 commits intomastera-r-j/graphein:masterfrom pointcloudsa-r-j/graphein:pointcloudsCopy head branch name to clipboard

Commits

Commits on Aug 2, 2022

• add ProteinsX dataset classes

  a-r-j

  committed
  5d10045

  Copy full SHA for 5d10045

• black

  a-r-j

  committed
  9fc5931

  Copy full SHA for 9fc5931

• update changelog

  a-r-j

  committed
  c6a09cd

  Copy full SHA for c6a09cd

• add missing self

  a-r-j

  committed
  4c12335

  Copy full SHA for 4c12335

• add missing importerror log

  a-r-j

  committed
  f43aa30

  Copy full SHA for f43aa30

• use relative import for pyg dataset

  a-r-j

  authored
  5cdd865

  Copy full SHA for 5cdd865

• try changing import order in datasets init

  a-r-j

  authored
  8329f9b

  Copy full SHA for 8329f9b

• wrap import in try/except

  a-r-j

  committed
  c928f11

  Copy full SHA for c928f11

• fix try/except - should be tuple

  a-r-j

  committed
  8bb2c72

  Copy full SHA for 8bb2c72

• add additional non-standard residues to constants

  a-r-j

  authored
  9ccc4a1

  Copy full SHA for 9ccc4a1

Commits on Aug 6, 2022

• add pdb fixing utils and AF2 metadata download util

  a-r-j

  committed
  c80d6bc

  Copy full SHA for c80d6bc

• Merge branch 'pointclouds' of https://www.github.com/a-r-j/graphein into pointclouds

  a-r-j

  committed
  f9f5c62

  Copy full SHA for f9f5c62

• add lru_cache to metadata retrieval

  a-r-j

  committed
  1393a0e

  Copy full SHA for 1393a0e

• add ProteinsDD dataset

  a-r-j

  committed
  b0944e0

  Copy full SHA for b0944e0

• add deep sea proteins

  a-r-j

  committed
  0ab8ed7

  Copy full SHA for 0ab8ed7

• update readme

  a-r-j

  committed
  106220b

  Copy full SHA for 106220b

• add negatome

  a-r-j

  committed
  f623f70

  Copy full SHA for f623f70

• add data combiner util

  a-r-j

  committed
  62eb5bf

  Copy full SHA for 62eb5bf

• lru_cache typo

  a-r-j

  committed
  baeb147

  Copy full SHA for baeb147

• fix typehint in utils

  a-r-j

  committed
  956edbc

  Copy full SHA for 956edbc

• try to fix docker bug by not importing prefab datasets

  a-r-j

  committed
  2db8ce2

  Copy full SHA for 2db8ce2

• add protein function

  a-r-j

  committed
  5baad6a

  Copy full SHA for 5baad6a

• remove travis

  a-r-j

  committed
  d8b3774

  Copy full SHA for d8b3774

• fix input validation bug

  a-r-j

  committed
  735e569

  Copy full SHA for 735e569

• remove versioneer

  a-r-j

  committed
  61e0c26

  Copy full SHA for 61e0c26

• clean up old contrib

  a-r-j

  committed
  e41e438

  Copy full SHA for e41e438

• move contrib stuff to docs

  a-r-j

  committed
  c268fa5

  Copy full SHA for c268fa5

• rm rtd config

  a-r-j

  committed
  52035bd

  Copy full SHA for 52035bd

• rm gitattr

  a-r-j

  committed
  bdcd750

  Copy full SHA for bdcd750

• rm versioneer

  a-r-j

  committed
  8ae007b

  Copy full SHA for 8ae007b

• add CSM features

  a-r-j

  committed
  157d79e

  Copy full SHA for 157d79e

• add new features to docs

  a-r-j

  committed
  e50b3d1

  Copy full SHA for e50b3d1

• separate alphafold utils and add AF2 parallelised download

  a-r-j

  committed
  a0ca3cd

  Copy full SHA for a0ca3cd

Commits on Aug 8, 2022

• Merge branch 'master' into pointclouds

  a-r-j

  authored
  af72a29

  Copy full SHA for af72a29

Commits on Sep 19, 2022

• Merge branch 'master' into pointclouds

  a-r-j

  authored
  fc88266

  Copy full SHA for fc88266