v.1.1.0

Modifications from v1.0.2:

changes to julia implementation:
choice between

1. global package installation

• initial call: julia ENT3C.jl --config-file=config/config.test.json --install-deps=yes
• after that: julia ENT3C.jl --config-file=config/config.test.json

2. or loading of predefined enviornments for julia 1.10.4 or 1.11.2:

• julia ENT3C.jl --config-file=config/config.json --resolve-env=yes --julia-version=<v.v.v>

v.1.0.2

Modifications from v1.0.1:

• MATLAB implementation now as function with input <config.file.json>
• normalization dataset is now a parameter in config file: "WEIGHTS_NAME"
• fixed bug when dealing with very sparse sub-matrices. Such a matrix can result in nan values in S; these are ignored when computing similarity

v.1.0.1

Modifications from v1.0.0:

• Update README for setting parameters and command-line usage
• chromosome list in configuration file must be a comma-separated-list
• ENT3C.jl is now called with options --config-file=</path/to/config.json> and --install-deps <yes/no>
  • 2nd argument: optional julia dependency management with Project.toml and Manifest.toml files
• new requirement for julia implementation is ubuntu's hdf5tools for proper reading of cooler containers

ENT3Cv1.0.0

Full Changelog: https://github.com/X3N1A/ENT3C/commits/ENT3Cv1.0.0