Merge pull request #295 from UW-GAC/deploy/stage

Deploy to prod

requirements/dev-requirements.txt

@@ -2,12 +2,10 @@
 # This file is autogenerated by pip-compile with Python 3.8
 # by the following command:
 #
-#    pip-compile requirements/dev-requirements.in
+#    pip-compile dev-requirements.in
 #
 alabaster==0.7.13
     # via sphinx
-appnope==0.1.3
-    # via ipython
 asgiref==3.5.2
     # via
     #   -c requirements/requirements.txt
@@ -22,7 +20,7 @@ backcall==0.2.0
     # via ipython
 black==22.12.0
     # via -r requirements/dev-requirements.in
-certifi==2022.5.18.1
+certifi==2023.11.17
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
@@ -49,7 +47,7 @@ dill==0.3.7
     # via pylint
 distlib==0.3.7
     # via virtualenv
-django==3.2.19
+django==3.2.23
     # via
     #   -c requirements/requirements.txt
     #   django-debug-toolbar
@@ -169,7 +167,7 @@ pyparsing==3.0.9
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt
     #   packaging
-pytz==2022.1
+pytz==2023.3.post1
     # via
     #   -c requirements/requirements.txt
     #   babel
@@ -214,7 +212,7 @@ sphinxcontrib-qthelp==1.0.3
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.5
     # via sphinx
-sqlparse==0.4.2
+sqlparse==0.4.4
     # via
     #   -c requirements/requirements.txt
     #   django
@@ -257,7 +255,7 @@ typing-extensions==4.3.0
     #   ipython
     #   mypy
     #   pylint
-urllib3==1.26.9
+urllib3==2.1.0
     # via
     #   -c requirements/requirements.txt
     #   -c requirements/test-requirements.txt

requirements/requirements.in

@@ -50,3 +50,9 @@ pandas
 
 # for exporting django-tables2 tables to tsv.
 tablib
+
+
+# Temporary(?) pins to fix security alerts.
+certifi>=2023.7.22
+urllib3>=1.26.18
+sqlparse>=0.4.4

requirements/requirements.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.8
 # by the following command:
 #
-#    pip-compile requirements/requirements.in
+#    pip-compile requirements.in
 #
 argon2-cffi==21.3.0
     # via -r requirements/requirements.in
@@ -18,8 +18,10 @@ build==1.0.3
     # via pip-tools
 cachetools==5.2.0
     # via google-auth
-certifi==2022.5.18.1
-    # via requests
+certifi==2023.11.17
+    # via
+    #   -r requirements/requirements.in
+    #   requests
 cffi==1.15.0
     # via
     #   argon2-cffi-bindings
@@ -32,11 +34,11 @@ click==8.1.3
     # via pip-tools
 crispy-bootstrap5==0.7
     # via django-anvil-consortium-manager
-cryptography==37.0.2
+cryptography==41.0.4
     # via pyjwt
 defusedxml==0.7.1
     # via python3-openid
-django==3.2.19
+django==3.2.23
     # via
     #   -r requirements/requirements.in
     #   crispy-bootstrap5
@@ -63,7 +65,7 @@ django-dbbackup==4.0.1
     # via -r requirements/requirements.in
 django-environ==0.8.1
     # via -r requirements/requirements.in
-django-extensions==3.2.1
+django-extensions==3.2.3
     # via
     #   -r requirements/requirements.in
     #   django-anvil-consortium-manager
@@ -113,15 +115,15 @@ numpy==1.24.2
     # via
     #   django-anvil-consortium-manager
     #   pandas
-oauthlib==3.2.1
+oauthlib==3.2.2
     # via
     #   -r requirements/requirements.in
     #   requests-oauthlib
 packaging==21.3
     # via build
 pandas==1.5.2
     # via -r requirements/requirements.in
-pillow==9.3.0
+pillow==10.0.1
     # via -r requirements/requirements.in
 pip-tools==7.3.0
     # via -r requirements/requirements.in
@@ -159,7 +161,7 @@ python-slugify==6.1.2
     # via -r requirements/requirements.in
 python3-openid==3.2.0
     # via django-allauth
-pytz==2022.1
+pytz==2023.3.post1
     # via
     #   -r requirements/requirements.in
     #   django
@@ -184,8 +186,10 @@ six==1.16.0
     #   django-autocomplete-light
     #   google-auth
     #   python-dateutil
-sqlparse==0.4.2
-    # via django
+sqlparse==0.4.4
+    # via
+    #   -r requirements/requirements.in
+    #   django
 tablib==3.4.0
     # via -r requirements/requirements.in
 tenacity==8.2.1
@@ -197,8 +201,10 @@ tomli==2.0.1
     #   build
     #   pip-tools
     #   pyproject-hooks
-urllib3==1.26.9
-    # via requests
+urllib3==2.1.0
+    # via
+    #   -r requirements/requirements.in
+    #   requests
 wheel==0.41.3
     # via pip-tools
 whitenoise==6.0.0

requirements/test-requirements.txt

@@ -2,13 +2,13 @@
 # This file is autogenerated by pip-compile with Python 3.8
 # by the following command:
 #
-#    pip-compile requirements/test-requirements.in
+#    pip-compile test-requirements.in
 #
 attrs==22.1.0
     # via
     #   -c requirements/requirements.txt
     #   pytest
-certifi==2022.5.18.1
+certifi==2023.11.17
     # via
     #   -c requirements/requirements.txt
     #   requests
@@ -26,7 +26,7 @@ django-test-migrations==1.3.0
     # via -r requirements/test-requirements.in
 exceptiongroup==1.0.4
     # via pytest
-factory-boy==3.2.1
+factory-boy==3.3.0
     # via -r requirements/test-requirements.in
 faker==13.15.1
     # via factory-boy
@@ -82,7 +82,7 @@ tomli==2.0.1
     #   pytest
 typing-extensions==4.3.0
     # via django-test-migrations
-urllib3==1.26.9
+urllib3==2.1.0
     # via
     #   -c requirements/requirements.txt
     #   requests