Evaluation Function

[naseweisssss]

This PR aim to provide an evaluate function for log_posterior

[coveralls]

Pull Request Test Coverage Report for Build 13387858561

Details

• 78 of 112 (69.64%) changed or added relevant lines in 2 files are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage decreased (-0.6%) to 79.669%

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Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
src/experimental/ProbabilisticGraphicalModels/inference.jl	75	109	68.81%

Totals
Change from base Build 13368193073:	-0.6%
Covered Lines:	1685
Relevant Lines:	2115

---

💛 - Coveralls

[github-actions]

Benchmark results on macOS (aarch64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.1 to /Users/runner/.bridgestan/bridgestan-2.6.1
Done!
Model dogs produces error: ErrorException("log_density() failed with unknown exception\n")

Model	Parameter Count	Data Count	Stan Density Time (µs)	Stan Density Gradient Time (µs)	JuliaBUGS Density Time with Graph Walk (µs)	JuliaBUGS Density Gradient Time with ReverseDiff.jl(compiled tape) (µs)
rats	65	150	5.3834	7.58333	71.542	275.126
pumps	12	10	0.9375	1.1208	10.021	22.333
dogs	2	720	NA	NA	192.791	335.5
seeds	26	21	1.98438	2.2465	23.75	62.458
surgical_realistic	14	12	1.27539	1.42822	13.0	28.292
magnesium	108	96	10.8335	11.3335	127.875	231.417
salm	22	18	3.53244	3.73617	16.583	42.083
equiv	15	20	3.61975	3.99317	16.167	50.5
dyes	9	30	1.50437	1.6722	9.646	41.25
stacks	6	21	1.21354	1.57812	18.958	45.041
epil	303	236	34.542	38.917	200.541	553.855
blockers	47	44	2.572	2.82867	48.75	96.792
oxford	244	240	10.6875	12.9375	292.042	565.167
lsat	1006	5000	103.625	140.375	1665.48	3279.79
bones	33	422	79.708	84.708	361.334	399.458
mice	20	65	6.653	8.04167	23.792	97.792
kidney	64	58	8.63867	11.5625	67.625	186.542
leuk	18	714	16.459	21.458	277.917	505.917
leukfr	40	714	22.75	29.791	291.666	598.875

Benchmark results on Ubuntu (x64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.1 to /home/runner/.bridgestan/bridgestan-2.6.1
Done!
Model dogs produces error: ErrorException("log_density() failed with exception: Exception: bernoulli_lpmf: Probability parameter is inf, but must be in the interval [0, 1] (in '/home/runner/work/JuliaBUGS.jl/JuliaBUGS.jl/benchmark/stan/bugs_examples/vol1/dogs/dogs.stan', line 37, column 6 to line 38, column 62)\n")

Model	Parameter Count	Data Count	Stan Density Time (µs)	Stan Density Gradient Time (µs)	JuliaBUGS Density Time with Graph Walk (µs)	JuliaBUGS Density Gradient Time with ReverseDiff.jl(compiled tape) (µs)
rats	65	150	5.29	7.56067	71.9395	89.457
pumps	12	10	0.951767	1.14365	11.5115	6.3745
dogs	2	720	NA	NA	172.863	149.378
seeds	26	21	2.03807	2.56391	26.5	19.957
surgical_realistic	14	12	1.32655	1.48075	14.612	8.52233
magnesium	108	96	10.3695	11.7065	120.024	78.517
salm	22	18	2.28577	2.7642	21.119	12.7085
equiv	15	20	2.51736	3.28167	18.154	15.519
dyes	9	30	1.01439	1.1782	11.5165	14.407
stacks	6	21	1.07719	1.41457	22.853	14.6375
epil	303	236	27.01	33.483	263.742	236.221
blockers	47	44	3.15367	3.4624	55.233	28.784
oxford	244	240	14.011	16.441	308.696	169.356
lsat	1006	5000	160.35	198.435	1838.27	1422.8
bones	33	422	73.126	90.388	418.085	226.743
mice	20	65	7.33625	9.39067	28.814	38.252
kidney	64	58	11.0405	16.621	62.266	69.259
leuk	18	714	21.99	28.223	209.195	193.511
leukfr	40	714	25.948	33.492	228.957	251.303

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	add_edge!(bn, :Z1, :Z2)
	add_edge!(bn, :Z1, :Z2)