v0.2.2

What's Changed

• Expose basic graph layout options in frontend by @epatters in #390
• Have menu bar float with scroll in model by @jmoggr in #397
• Help page for quick introduction by @KevinDCarlson in #400
• Mitigate failed test cleanups by logging in if the user already exists by @jmoggr in #399
• Link to quick intro from main help page by @KevinDCarlson in #405

New Contributors

• @jmoggr made their first contribution in #397

Full Changelog: v0.2.1...v0.2.2

v0.2.1

What's Changed

• Nix config for daily backup of database by @epatters in #371
• Remove Sentry from Automerge doc server and Nix config by @epatters in #372
• Warning for incomplete signup form submission by @hamidahoderinwale in #352
• Individual READMEs for the backend and frontend packages by @epatters in #373
• More idiomatic phrasing for general access permissions by @epatters in #386
• Help pages for all theories by @KevinDCarlson in #389

Full Changelog: v0.2...v0.2.1

v0.2: Wren

What's Changed

• Temporary workaround for backend in dev environment by @goretkin in #217
• Upgrade to automerge-prosemirror v0.0.13 by @epatters in #218
• Upgrade to babel-plugin-jsx-dom-expressions v0.39.2 by @epatters in #220
• Cell menu items to move cell up or down by @hamidahoderinwale in #215
• Dev docs comparing (bi)modules over models of double theories by @KevinDCarlson in #175
• BUILD: Small dev infra changes by @goretkin in #221
• Horizontal scrollbar in content panels by @hamidahoderinwale in #226
• Causal loop diagrams with unknown link polarities by @quffaro in #227
• Remove broken linear path in layout for links in stock-flow diagrams by @KevinDCarlson in #232
• Add nix config for dev server by @shaoweilin in #233
• Set Vite mode when building frontend for staging deployment by @epatters in #234
• Check monicity of free simple model morphisms, initialize hom search, monic search constraint by @kris-brown in #204
• Rewrite web server in Rust and implement auth by @epatters in #211
• Selection widget for theories by @hamidahoderinwale in #225
• Tweak names, descriptions, and groups of theories by @epatters in #249
• Diagram editor for models of discrete double theories by @epatters in #251
• Double theory for diagrammatic equations with unary operations by @epatters in #257
• Diagrams in models of discrete double theories by @KevinDCarlson in #248
• Validate diagrams in models of discrete double theories by @epatters in #259
• Wasm bindings for diagrams for discrete theories, and frontend integration by @epatters in #261
• Upgrade ode_solvers crate to v0.5 by @epatters in #262
• Export SVG for model visualizations by @hamidahoderinwale in #258
• Toolbar and header for diagram editor by @epatters in #263
• Analyses for diagrams in models by @epatters in #264
• Visualize diagrams in models using Graphviz by @epatters in #265
• Replace/remove a few type aliases for IDs by @epatters in #268
• Anonymous objects in diagrams by @epatters in #270
• Render empty model name as Untitled in backlinks by @kris-brown in #273
• Run Decapodes simulation via Julia kernel in Jupyter by @epatters in #267
• Send Decapodes judgments after type inference and validation by @epatters in #275
• Categories with scalars by @KevinDCarlson in #274
• UI to edit scalar constants in Decapodes analysis by @epatters in #277
• Anon objects, scalar constants, and more DEC operators in Decapodes integration by @quffaro in #279
• Upgrade to qubit v0.10.2 and ts_rs v10.1.0 by @epatters in #280
• Improved Decapodes integration: domains, meshes, initial conditions, plot variables by @epatters in #283
• Reactive helpers for Jupyter kernels by @epatters in #285
• Reorganize code in AlgebraicJulia service by @quffaro in #287
• Models of discrete tabulator theories in core by @epatters in #292
• Validate models of discrete tabulator theories by @epatters in #294
• Wasm bindings for models of discrete tabulator theories by @epatters in #295
• Script to build sys image for AlgebraicJulia service by @quffaro in #289
• Remove redundant mesh parameter in Decapodes interop by @quffaro in #300
• Button to get help about the active theory by @hamidahoderinwale in #278
• Duplicate a cell via cell popup menu by @epatters in #305
• Auto-generated summary of theory in theory-specific help page by @epatters in #307
• Document-level menus for models, diagrams, and analyses by @epatters in #309
• Menu items to duplicate models and diagrams by @epatters in #310
• Style Foldable better and add PanelHeader by @epatters in #311
• Help page with list of all theories by @epatters in #312
• Menu item to log in or log out by @epatters in #313
• Models in the frontend always have a specified theory by @epatters in #316
• Causal loop diagrams with delays by @epatters in #322
• Fix wrong placement of caesuras when multiple graphs share edges by @epatters in #325
• Usernames in backend and frontend by @epatters in #317
• Distinguish icons for different kinds of help by @hamidahoderinwale in #328
• Duration parameter for Decapodes simulations by @quffaro in #329
• Nix configuration, scripts and documentation for automerge and backend services by @shaoweilin in #331
• Share documents on per-user basis by @epatters in #330
• Remove mathexpr module for now by @epatters in #336
• Upgrade wasm-bindgen and fix new lint by @epatters in #337
• Polynomials and polynomial parameterized dynamical systems by @epatters in #338
• Mass-action ODE systems for stock-flow diagrams by @epatters in #345
• Bibliography link doesn't work in staging deployment by @epatters in #354
• Update credits page for v0.2 release by @epatters in #355
• More specific text in menu item for user profile settings by @epatters in #367
• Add "New model" action to default application menu by @epatters in #368
• Standardize base types for documents and links between them by @epatters in #369

New Contributors

• @hamidahoderinwale made their first contribution in #215
• @quffaro made their first contribution in #227

Full Changelog: v0.1.1...v0.2

v0.1.1

What's Changed

• Switch from npm to pnpm by @epatters in #203
• Add support for a dev container by @goretkin in #210
• Add Shaowei's public key by @shaoweilin in #213
• Rename backend-next to backend for prod server by @shaoweilin in #214

New Contributors

• @goretkin made their first contribution in #210
• @shaoweilin made their first contribution in #213

Full Changelog: v0.1...v0.1.1

v0.1: Hummingbird

What's Changed

• Lotka-Volterra ODE semantics for reg nets/causal loop diagrams by @epatters in #170
• Prevent tree-shaking from breaking echarts by @epatters in #171
• Use Dormand-Prince method to solve ODEs by @epatters in #172
• Use Topos logo as favicon by @epatters in #174
• Platform-independent watch script for forester by @KevinDCarlson in #176
• Mathematical bibliography in dev docs and improvements to README by @epatters in #177
• Don't assume Lotka-Volterra interaction coefficients are set in frontend by @epatters in #178
• Enforce noUncheckedIndexedAccess in TypeScript by @epatters in #180
• Gracefully handle errors from ODE simulation by @epatters in #181
• MDX support and user documentation infrastructure by @epatters in #183
• Reusable toolbar component with basic branding by @epatters in #191
• Don't ask for type of missing object when validating a model by @epatters in #192
• Don't run Lotka-Volterra ODE simulation when diagram is empty by @epatters in #193
• Don't send edges with missing source/target to Graphviz by @epatters in #194
• Don't use light-dark feature in CSS by @epatters in #195
• Make "Untitled" be placeholder text rather then default document name by @epatters in #196
• Make sure to hide completions menu when inline input loses focus by @epatters in #197
• Don't show "Loading..." text in frontend by @epatters in #198
• Replace "Analyses" pane with button to create an analysis by @epatters in #199
• Components for warning and error alerts by @epatters in #200
• Overview of concepts behind CatColab in user docs by @epatters in #201

Full Changelog: v0.0.2...v0.1

v0.0.2

What's Changed

• Lazy load double theories in the frontend by @epatters in #128
• New cell button at end of notebook by @epatters in #130
• Indicate minimum Rust version in Cargo.toml by @epatters in #132
• Add missing readme step, correct server error by @KevinDCarlson in #134
• Set backend host in Vite dev environment by @epatters in #136
• Refactor the trait interface for finitely generated things by @olynch in #118
• Notebook interface for analyzing models by @epatters in #135
• Handles on notebook cells by @epatters in #140
• Format and lint CSS by @epatters in #141
• Disable netlify deploy for external PR by @olynch in #147
• Add indicator to "choose logic" dropdown by @kyracho in #145
• Find feedback loops in regulatory networks by @epatters in #149
• Extract and document function to safely deep copy a JSON object by @epatters in #152
• Docs on double theories for companion and conjoint pairs by @epatters in #153
• Move clone constraint to Category::Ob/Mor by @kris-brown in #138
• Dev docs on discrete models of double theories by @epatters in #156
• Add Evan's public key to backend config by @olynch in #157
• Validate morphisms between models of discrete double theories by @kris-brown in #155
• Styled tooltips, take 2 by @epatters in #163
• Script to build forester plus upgrade to forester v4.3.1 by @olynch in #162
• ODE simulation in Rust core by @olynch in #114
• Make backend more robust by @olynch in #158
• Notebooks that reference each other by @olynch in #164
• Set up Netlify redirects for a single-page app by @epatters in #166
• Second attempt to set up Netlify redirects for SPA by @epatters in #167

New Contributors

• @kyracho made their first contribution in #145
• @kris-brown made their first contribution in #138

Full Changelog: v0.0.1...v0.0.2

v0.0.1

What's Changed

• Port dev docs to Forester 4.0 by @epatters in #1
• Toy example testing the Rust package specta by @epatters in #2
• Finite sets in Rust by @epatters in #3
• Finite sets in Rust, take 2 by @epatters in #4
• Mappings, columns, and graphs by @epatters in #5
• Free categories and underlying graphs by @epatters in #6
• Finitely generated and finite categories by @epatters in #7
• Validation for columns and graphs by @epatters in #8
• Double computads by @epatters in #9
• Mapping between graphs by @epatters in #10
• Refactor top-level modules according to dimensionality by @epatters in #11
• Double diagrams by @epatters in #12
• Refactor columnar data structures and validation by @epatters in #14
• Basics of double theories by @epatters in #15
• Standard library of discrete double theories by @epatters in #16
• Rich text editing with automerge-prosemirror by @epatters in #17
• Pop-up menu to create new cells by @epatters in #23
• Integrate notebook frontend with discrete double theories by @epatters in #25
• Improvements to command popover by @epatters in #27
• Visualize generators of model as a graph by @epatters in #28
• New appproach to exposing Rust data types through wasm-bindgen by @epatters in #29
• Models of discrete double theories in core by @epatters in #33
• Design notes about Automerge by @olynch in #35
• Test Rust core in CI by @olynch in #36
• Build dev docs in CI by @olynch in #38
• Wasm bindings for models of discrete double theories by @epatters in #39
• Add typescript and rust API docs to website by @olynch in #40
• CI: Linting and Formatting for Rust and Typescript by @olynch in #41
• CI for catlog-wasm by @olynch in #42
• Validate models of discrete double theories in core by @epatters in #55
• Use Suspense rather than Show when loading Graphviz by @epatters in #56
• Show model validation errors in frontend by underlining by @epatters in #59
• Folder reorganization to top-level package directory by @olynch in #61
• Stem cells and choosebox by @olynch in #57
• Add pull request template by @olynch in #66
• Show cell kind in right hand column by @olynch in #65
• Dev docs on tabulators by @epatters in #72
• Moved release profile settings to top-level Cargo.toml by @olynch in #75
• Update the link to forester binary by @olynch in #74
• Discrete tabulator theories in core by @epatters in #76
• Improve build instructions in README by @KevinDCarlson in #92
• Padding input fillers for happier narrow-cell clickbox by @KevinDCarlson in #94
• Wasm bindings for discrete tabulator theories by @epatters in #93
• Link to demo and dev docs in README by @epatters in #95
• Stock and flow diagrams in the frontend by @epatters in #96
• Custom visualization for stock-flow diagrams by @epatters in #98
• Upgrade tsify-next to v0.5.4 by @epatters in #101
• Causal loop diagrams by @epatters in #102
• Data structure for morphisms between models of discrete double theories by @epatters in #103
• References in docs for catlog by @epatters in #105
• Backend integrating Automerge sync server with Postgres by @olynch in #62
• Notes on discrete models by @epatters in #108
• Bump forester to release 4.2 by @TheCedarPrince in #107
• Morphism search for free models of discrete double theories by @epatters in #106
• Doctrine of nullable signed categories by @epatters in #109
• Wasm bindings for finding positive/negative loops by @epatters in #121
• Interface to browse feedback loops in causal loop diagrams by @epatters in #122
• Implement Eq trait for double models and dependencies by @epatters in #124
• Deploy to production on release by @olynch in #125
• Disable PR comment on release by @olynch in #126
• Try to fix the release deploy again by @olynch in #127

New Contributors

• @epatters made their first contribution in #1
• @olynch made their first contribution in #35
• @KevinDCarlson made their first contribution in #92
• @TheCedarPrince made their first contribution in #107

Full Changelog: https://github.com/ToposInstitute/CatColab/commits/v0.0.1