Fixed bug in pbs profile

SystemsGenetics · Apr 9, 2021 · 9095d46 · 9095d46
1 parent 2acb782
commit 9095d46
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -144,15 +144,15 @@ profiles {
                 clusterOptions = {
                     params.similarity.hardware_type == "cpu"
                     ? "-l select=1:mem=8gb:ncpus=2:interconnect=any:phase=10"
-                    : "-l select=1:mem=8gb:ncpus=${params.similarity.threads}:ngpus=1:hardware_type=${params.similarity.hardware_type}:interconnect=any"
+                    : "-l select=1:mem=8gb:ncpus=${params.similarity.threads}:ngpus=1:gpu_model=${params.similarity.hardware_type}:interconnect=any"
                 }
             }
             withName:similarity_mpi {
                 time = "24h"
                 clusterOptions = {
                     params.similarity.hardware_type == "cpu"
                     ? "-l select=${params.similarity.chunks + 1}:ncpus=1:mem=8gb:interconnect=any:phase=10"
-                    : "-l select=${params.similarity.chunks + 1}:ncpus=${params.similarity.threads}:mem=8gb:ngpus=1:hardware_type=${params.similarity.hardware_type}:interconnect=any"
+                    : "-l select=${params.similarity.chunks + 1}:ncpus=${params.similarity.threads}:mem=8gb:ngpus=1:gpu_model=${params.similarity.hardware_type}:interconnect=any"
                 }
             }
             withName:threshold_rmt {