add reactions based on KEGG and MetaCyc annotations#304

Merged

edkerk merged 16 commits intodevelopfrom add-new-reaction-after-correction

Jul 8, 2023

+3,576-1,894

Commits on Jul 1, 2023

feat：add 209 genes and 357 mets after solving the growth problem

cheng-yu-zhang
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edkerk
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^ This is a combination of 6 commits.
edkerk
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^ This is a combination of 4 commits.

cheng-yu-zhang
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edkerk
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fix: invalid YAML due to incorrect " in rxn name
edkerk
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chore: update the folder v8.6.1

cheng-yu-zhang
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edkerk
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update folder "v8.6.1"

cheng-yu-zhang
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edkerk
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recheck the new rxns

cheng-yu-zhang
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edkerk
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remove R00245

cheng-yu-zhang
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edkerk
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fix: remove partial reactions, where the full rxn is already in model
edkerk
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fix: manual curation of new reactions
edkerk
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fix: remove figures (> 12 MB)
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chore: remove intermediate recon files
edkerk
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refactor: move curation data + script to v8.6.3
edkerk
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chore: run v8_6_3
edkerk
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Commits on Jul 8, 2023