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yeast8.4.1#241

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BenjaSanchez merged 25 commits intomasterSysBioChalmers/yeast-GEM:masterfrom develSysBioChalmers/yeast-GEM:develCopy head branch name to clipboardJul 20, 2020

+619-366

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Commits on Jun 4, 2020

• fix-bug: mixed ID for MNXID and Notes

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• fix: update with optimizeCbModel new output

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Commits on Jun 18, 2020

• fix: remove authorships in scripts

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Commits on Jun 19, 2020

• fix: update the missing BIGG IDs here in the notes part and also remove the useless notes

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Commits on Jun 20, 2020

• Merge pull request #230 from SysBioChalmers/fix/remove-authorships

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Commits on Jun 22, 2020

• Merge branch 'devel' into fix-MNXbug

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Commits on Jun 23, 2020

• Merge pull request #226 from SysBioChalmers/fix-MNXbug

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Commits on Jun 25, 2020

• doc: clarify Zenodo authorships

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• doc: misc releasing guidelines

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Commits on Jun 26, 2020

• Merge pull request #233 from SysBioChalmers/fix/releasing-guidelines

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Commits on Jul 2, 2020

• feat: create requirements via pip-tools

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• feat: dev-requirements

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Commits on Jul 3, 2020

• feat: switch to touch for creating .env

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• refactor: simplify dev-requirements.in

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• doc: managing python dependencies

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Commits on Jul 6, 2020

• Merge pull request #235 from SysBioChalmers/feat/pip-tools

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Commits on Jul 15, 2020

• fix-rxn: change dubious metabolite name

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• fix-rxn: r_0241 correct cofactor

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• fix-rxn: r_0774 and r_0775 involve ATP hydrolysis

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• fix-rxn: remove incorrect gene and EC number

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Commits on Jul 16, 2020

• Merge pull request #237 from SysBioChalmers/fix/misc

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Commits on Jul 17, 2020

• doc: visualization instructions

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• doc: correct metabolic atlas links

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• Merge pull request #240 from SysBioChalmers/doc/yeast-gem-viz

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• chore: update dependencies

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