fix: correct uniprot ID of YCR024C

code/modelCuration/v9_0_2.m

@@ -112,7 +112,8 @@
 % To resolve MET17 causing methionine auxotrophy
 model = setParam(model,'lb','r_0815',0);
 
-% THI4-thiamine & HOM2-methionine and threonine...
+% To resolve THI4 causing thiamine auxotrophy and HOM2 causing methionine
+% and threonine auxotrophy
 model = removeReactions(model,'r_2070',true,true);
 model = removeReactions(model,'r_2071',true,true);
 rxnsToAdd.rxns      = generateNewIds(model,'rxns','r_',2);
@@ -135,6 +136,10 @@
 % To resolve URA2 causing uracil auxotrophy
 model = changeGrRules(model,'r_0250','YJL130C or (YJR109C and YOR303W)',true);
 
+%% Issue #372. Correct UniProt identifier of YCR024C and YCR024C-A
+geneIdx = getIndexes(model,'YCR024C','genes');
+model.geneMiriams{geneIdx}.value = {'P25345'};
+
 %% DO NOT CHANGE OR REMOVE THE CODE BELOW THIS LINE.
 % Show some metrics:
 cd(fullfile(codeDir,'modelTests'))

model/dependencies.txt

@@ -1,4 +1,4 @@
 MATLAB	24.1.0.2568132 (R2024a) Update 1
 libSBML	5.20.2
-RAVEN_toolbox	commit 166bc4f
+RAVEN_toolbox	commit c90390e
 COBRA_toolbox	3.4

model/yeast-GEM.xml

@@ -170685,7 +170685,7 @@
             <rdf:Description rdf:about="#YCR024C">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/uniprot/P32903"/>
+                  <rdf:li rdf:resource="https://identifiers.org/uniprot/P25345"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>

model/yeast-GEM.yml

@@ -120621,7 +120621,7 @@
       - id: "YCR024C"
       - name: "SLM5"
       - annotation: !!omap
-          - uniprot: "P32903"
+          - uniprot: "P25345"
     - !!omap
       - id: "YCR024C-A"
       - name: "PMP1"