Merge pull request #10 from SysBioChalmers/fix/yeastGEMcompliance

fix: rxnConfidenceScores
SysBioChalmers · Sep 3, 2018 · 47d6459 · 47d6459
2 parents 12cd253 + c84a015
commit 47d6459
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/models/addSLIMErxn.m b/models/addSLIMErxn.m
@@ -145,6 +145,7 @@
 
 try
     printRxnFormula(model,rxnID,true,true,true);
+    model.rxnConfidenceScores(strcmp(model.rxns,rxnID)) = 1;
 catch
     disp(['Repeated: ' rxnName])
 end

diff --git a/models/changeChainComp.m b/models/changeChainComp.m
@@ -1,7 +1,7 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % model = changeChainComp(model,chainData)
 %
-% Benjamín J. Sánchez. Last update: 2018-03-24
+% Benjamín J. Sánchez. Last update: 2018-05-20
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 function model = changeChainComp(model,chainData)
@@ -31,6 +31,7 @@
                     'upperBound', 1000);
 
 printRxnFormula(model,rxnID,true,true,true);
+model.rxnConfidenceScores(strcmp(model.rxns,rxnID)) = 1;
 
 end
 

diff --git a/models/changeLipidComp.m b/models/changeLipidComp.m
@@ -1,7 +1,7 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % model = changeLipidComp(model,lipidData)
 %
-% Benjamín J. Sánchez. Last update: 2018-03-24
+% Benjamín J. Sánchez. Last update: 2018-05-20
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 function model = changeLipidComp(model,lipidData)
@@ -29,6 +29,7 @@
                     'lowerBound', 0, ...
                     'upperBound', 1000);
 printRxnFormula(model,rxnID,true,true,true);
+model.rxnConfidenceScores(strcmp(model.rxns,rxnID)) = 1;
 
 end
-Original file line number
+Diff line change
@@ Expand Up / @@ -145,6 +145,7 @@ @@
     try
         printRxnFormula(model,rxnID,true,true,true);
+        model.rxnConfidenceScores(strcmp(model.rxns,rxnID)) = 1;
     catch
         disp(['Repeated: ' rxnName])
     end
@@ Expand Down @@