Skip to content

v2.5.0
Compare
Choose a tag to compare
@edkerk edkerk released this 16 May 19:24
v2.5.0
f0ede3d
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

Main improvements in this release:

  • fix:
    • exportModel prevent duplicated InChI prefix (PR #335)
    • contractModel keep complexes (AND relationship) together, resulting in some redundancy but correct grRules (PR #337)
    • getModelFromHomology correct brackets if multiple orthologs are included (PR #337)
    • constructEquation by default uses rev field to indicate reversibility (PR #338)
    • importModel correctly parse taxonomy URL if https:\\ is defined (PR #338)
    • importModel prevent duplicating SBO terms (PR #338)
    • exportModel extracts chemical formulae from model.inchis if available (PR #341)
  • feat:
    • expandModel can give list of reactions to check (PR #337)
    • setParam can take 1 reaction ID as char, and if multiple reactions can changed it can take different paramTypes (e.g. {'lb','ub','ub','lb'}) (PR #337)
    • addGenesRaven throw detailed warning instead of error if gene already exist (PR #337)
    • new model fields model.annotation.authors, model.annotation.sourceUrl, model.version and model.date (solves #311)
    • writeYaml writes meta data in yml file (solves #311)
  • refactor:
    • rename model.description to model.name (solves #311)
  • doc:
    • README.md link to 'master' Zenodo URL, not version-specific (PR #337)
Assets 2
Loading