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Human 1.7.0
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@haowang-bioinfo haowang-bioinfo released this 20 Apr 08:03
v1.7.0
02613bf
  • Features (PR #245):
    • a new column metMAID is added to metabolites.tsv, according to the plan proposed in #174
  • Features (PR #241):
    • update reactions.tsv by adding associations to Rhea ids that mapped to 590 rxns so far
  • Fixes (PR #240):
    • update annotation for mets m01778 and m02646, as suggested in #239:
  • Features (PR #237):
    • add new function evalGeneEssentialityPred that can be used to assess gene essentiality predictions made by a GEM
  • Features (PR #234):
    • complete the ids of rxnMAID in reactions.tsv by filling blank fields, as agreed in #174
  • Fixes (PR #230):
    • remove the extra space at the end of the subsystem and reaction names
  • Style (PR #228):
    • rename functions as proposed in #227
      • annotateModel --> annotateGEM
      • importHumanYaml --> importYaml
      • writeHumanYaml --> exportYaml
    • replace branch devel with develop
  • Style (PR #223):
    • re-organize files and folders as discussed in #190
      • move files, scripts, and models in data/ and code/ that are no longer maintained or in use to a .deprecated folder
      • add README file for data and code directories
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