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Fix: GPR curation for acyl-CoA hydrolysis and nicotinate and nicotinamide metabolism #934

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Fix: GPR curation for acyl-CoA hydrolysis and nicotinate and nicotinamide metabolism #934

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23545f2
Fix: GPR curation for Acyl-CoA hydrolysis and Nicotinate and nicotina…
JHL-452b Dec 6, 2024
e0fe050
chore: add macaw test result
JHL-452b Dec 6, 2024
33c0163
Merge remote-tracking branch 'origin/develop' into Fix-Acyl_CoA_hydro…
edkerk Dec 17, 2024
b00e12f
chore: add macaw test result
edkerk Dec 17, 2024
dd6a5ea
Merge branch 'develop' into Fix-Acyl_CoA_hydrolysis-and-Nicotinate_an…
edkerk Dec 22, 2024
d5244a5
chore: add macaw test result
edkerk Dec 22, 2024
015c859
Merge branch 'develop' into Fix-Acyl_CoA_hydrolysis-and-Nicotinate_an…
edkerk Dec 22, 2024
ff8ee7e
chore: add gene essentiality test result
edkerk Dec 23, 2024
8b7e44d
fix: curation the GPR of MAR03009
JHL-452b Jan 8, 2025
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4 changes: 2 additions & 2 deletions data/testResults/README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/

The test results shown here were obtained by the GitHub Actions run in:

- **PR #939** (MACAW)
- **PR #883** (gene essentiality)
- **PR #934** (MACAW)
- **PR #934** (gene essentiality)

The results will be updated by any subsequent pull request. Summary results are shown as a comment in the corresponding pull request.

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25 changes: 12 additions & 13 deletions model/Human-GEM.yml
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Expand Up @@ -97161,7 +97161,7 @@
- MAM02745c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881 or ENSG00000112304 or ENSG00000159445"
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand Down Expand Up @@ -97263,7 +97263,7 @@
- MAM02040c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881 or ENSG00000112304 or ENSG00000159445"
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand Down Expand Up @@ -97589,7 +97589,7 @@
- MAM02040c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000136881 or ENSG00000205669"
- gene_reaction_rule: "ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand Down Expand Up @@ -97623,7 +97623,7 @@
- MAM02971c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000136881 or ENSG00000205669"
- gene_reaction_rule: "ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- references: "PMID:10092594;PMID:9153233;PMID:16103133;PMID:16940157;PMID:16103133;PMID:16940157;PMID:10578051;PMID:16103133;PMID:16940157;PMID:16103133;PMID:16940157;PMID:16103133;PMID:16940157;PMID:16940157"
Expand Down Expand Up @@ -97709,7 +97709,7 @@
- MAM02939c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881"
- gene_reaction_rule: "ENSG00000184227 or ENSG00000097021 or ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand Down Expand Up @@ -98015,7 +98015,7 @@
- MAM02040c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000136881 or ENSG00000205669"
- gene_reaction_rule: "ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand Down Expand Up @@ -98066,7 +98066,7 @@
- MAM02040c: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000136881 or ENSG00000205669"
- gene_reaction_rule: "ENSG00000136881 or ENSG00000159445"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- subsystem:
Expand All @@ -98083,7 +98083,7 @@
- MAM02774x: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000101473 or ENSG00000177465"
- gene_reaction_rule: "ENSG00000101473"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.2.2"
- references: "PMID:11013297;PMID:11013297"
Expand Down Expand Up @@ -133090,7 +133090,7 @@
- MAM02751c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000014257 or ENSG00000076685 or ENSG00000116981 or ENSG00000122643 or ENSG00000125458 or ENSG00000135318 or ENSG00000141698 or ENSG00000146587 or ENSG00000185013 or ENSG00000205309"
- gene_reaction_rule: "ENSG00000014257 or ENSG00000116981 or ENSG00000122643 or ENSG00000125458 or ENSG00000135318 or ENSG00000141698 or ENSG00000146587 or ENSG00000185013"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.3.5"
- references: "PMID:11690631;PMID:17405878;PMID:6284244;PMID:7999131"
Expand Down Expand Up @@ -133270,7 +133270,7 @@
- MAM02751c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000014257 or ENSG00000076685 or ENSG00000116981 or ENSG00000122643 or ENSG00000125458 or ENSG00000135318 or ENSG00000141698 or ENSG00000185013 or ENSG00000205309"
- gene_reaction_rule: "ENSG00000014257 or ENSG00000116981 or ENSG00000122643 or ENSG00000125458 or ENSG00000135318 or ENSG00000141698 or ENSG00000185013"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.3.5"
- subsystem:
Expand Down Expand Up @@ -133354,7 +133354,7 @@
- MAM02751c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000014257 or ENSG00000102575 or ENSG00000142513 or ENSG00000155893 or ENSG00000162836 or ENSG00000183760"
- gene_reaction_rule: "ENSG00000014257 or ENSG00000102575 or ENSG00000142513 or ENSG00000155893 or ENSG00000183760"
- rxnFrom: "HMRdatabase"
- eccodes: "3.1.3.2"
- subsystem:
Expand Down Expand Up @@ -133427,7 +133427,6 @@
- MAM02844c: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000198805"
- rxnFrom: "HMRdatabase"
- eccodes: "2.4.2.1"
- references: "PMID:2301;PMID:37803"
Expand Down Expand Up @@ -133584,7 +133583,7 @@
- MAM02583e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000004468 or ENSG00000109743"
- gene_reaction_rule: "ENSG00000004468"
- rxnFrom: "HMRdatabase"
- eccodes: "3.2.2.5"
- subsystem:
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