Merge branch 'develop' into Fix_Arg_Pro_Tyr_metabolism

SysBioChalmers · Jan 8, 2025 · 21580af · 21580af
2 parents 7f6ee40 + 008b443
commit 21580af
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diff --git a/code/DepMapGeneEss/PrepDepMapData.m b/code/DepMapGeneEss/PrepDepMapData.m
@@ -37,7 +37,7 @@
 save('data/arrayDataDepMap.mat','arrayDataDepMap');
 
 %Generate ftINIT prepData - only needs to be done once. Can take up to an hour to run
-model = importYaml('../../model/Human-GEM.yml');
+model = readYAMLmodel('../../model/Human-GEM.yml');
 [model.grRules, skipped] = simplifyGrRules(model.grRules, true);%takes a few minutes to run
 prepData = prepHumanModelForftINIT(model, true, '../../data/metabolicTasks/metabolicTasks_Essential.txt', '../../model/reactions.tsv');
 save('data/prepDataGeneSymbols.mat', 'prepData')