Merge pull request #160 from StoXProject/codecov #143
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| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| name: test-coverage | ||
| jobs: | ||
| test-coverage: | ||
| runs-on: ubuntu-22.04 | ||
| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| RSPM: ${{ matrix.config.rspm }} | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| id: install-r | ||
| with: | ||
| r-version: "4.4" | ||
| - name: Install query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| shell: Rscript {0} | ||
| - name: Cache R packages | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
| - name: Prepare for dependencies on Linux | ||
| if: runner.os == 'Linux' | ||
| run: | | ||
| sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev | ||
| shell: bash | ||
| - name: Install system dependencies | ||
| run: | | ||
| while read -r cmd | ||
| do | ||
| eval sudo $cmd | ||
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | ||
| # | ||
| # Install Reca (awlays from prod repo) | ||
| # | ||
| - name: Install Reca | ||
| run: | | ||
| remotes::install_cran("Reca", repos = c("https://stoxproject.github.io/repo/", "https://cloud.r-project.org/")) | ||
| shell: Rscript {0} | ||
| # | ||
| # Install StoX dependencies, corresponding to release status (unstable, pre-release or release) | ||
| # | ||
| - name: Install R package dependencies from the unstableRepo | ||
| if: (github.event_name == 'push' && github.ref_name == 'catchLotteryStox4') || (github.event_name == 'pull_request' && github.base_ref == 'catchLotteryStox4') | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/unstableRepo/", "https://cloud.r-project.org/")) | ||
| shell: Rscript {0} | ||
| - name: Install R package dependencies from the unstableRepo | ||
| if: (github.event_name == 'push' && github.ref_name == 'develop') || (github.event_name == 'pull_request' && github.base_ref == 'develop') | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/unstableRepo/", "https://cloud.r-project.org/")) | ||
| shell: Rscript {0} | ||
| - name: Install R package dependencies from the testingRepo | ||
| if: (github.event_name == 'push' && github.ref_name == 'testing') || (github.event_name == 'pull_request' && github.base_ref == 'testing') | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/testingRepo/", "https://cloud.r-project.org/")) | ||
| shell: Rscript {0} | ||
| - name: Install R package dependencies from the official repo | ||
| if: (github.event_name == 'push' && github.ref_name == 'master') || (github.event_name == 'pull_request' && github.base_ref == 'master') | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/repo/", "https://cloud.r-project.org/")) | ||
| shell: Rscript {0} | ||
| - name: Install dependencies | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("drat") | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
| - name: Test coverage | ||
| run: | | ||
| R CMD INSTALL . | ||
| Rscript -e 'covr::codecov()' | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
