Added project for LEZ 2018

intercatch/wgcse_2019/README.md

@@ -0,0 +1,10 @@
+# Intercatch submission for WGCSE
+
+Contains scripts used for produsing SI lines for intercatch submission for resubmission of LEZ catches in 2018 to WGCSE 2020. 
+Fleet decompositions (metiers) are merged in from logooks when available. For both logbooks and landing necessary fleet configurations are made in csv files in data/
+
+other configuration of area codes, stocks and metiers are in data/*.csv
+
+data files and shapefiles are not included in repository, but running the code assumes they are in data/
+
+scripts generally assume that the directory where this readme-file is located is the current working directory.

intercatch/wgcse_2019/data/Hovedområder_fom_2018/Homr_2018.cpg

@@ -0,0 +1 @@
+UTF-8

intercatch/wgcse_2019/data/Hovedområder_fom_2018/Homr_2018.prj

@@ -0,0 +1 @@
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]]

intercatch/wgcse_2019/data/Hovedområder_fom_2018/Homr_2018.shp.xml

@@ -0,0 +1,2 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata xml:lang="nb"><Esri><CreaDate>20190118</CreaDate><CreaTime>13175100</CreaTime><ArcGISFormat>1.0</ArcGISFormat><SyncOnce>FALSE</SyncOnce><DataProperties><lineage><Process ToolSource="c:\program files (x86)\arcgis\desktop10.0\ArcToolbox\Toolboxes\Data Management Tools.tbx\DefineProjection" Date="20141210" Time="103709">DefineProjection 493 PROJCS['WGS_1984_UTM_Zone_33N',GEOGCS['GCS_WGS_1984',DATUM['D_WGS_1984',SPHEROID['WGS_1984',6378137.0,298.257223563]],PRIMEM['Greenwich',0.0],UNIT['Degree',0.0174532925199433]],PROJECTION['Transverse_Mercator'],PARAMETER['False_Easting',500000.0],PARAMETER['False_Northing',0.0],PARAMETER['Central_Meridian',15.0],PARAMETER['Scale_Factor',0.9996],PARAMETER['Latitude_Of_Origin',0.0],UNIT['Meter',1.0]]</Process><Process ToolSource="c:\program files (x86)\arcgis\desktop10.0\ArcToolbox\Toolboxes\Data Management Tools.tbx\DefineProjection" Date="20141210" Time="103757">DefineProjection 493 GEOGCS['GCS_WGS_1984',DATUM['D_WGS_1984',SPHEROID['WGS_1984',6378137.0,298.257223563]],PRIMEM['Greenwich',0.0],UNIT['Degree',0.0174532925199433]]</Process></lineage><itemProps><itemLocation><linkage Sync="TRUE">file://\\FDIR26776\E$\ICES_nye_områder\GIS\Kompl_homnr.shp</linkage><protocol Sync="TRUE">Local Area Network</protocol></itemLocation><itemName Sync="TRUE">Kompl_homnr</itemName><imsContentType Sync="TRUE">002</imsContentType><itemSize Sync="TRUE">0.000</itemSize></itemProps><coordRef><type Sync="TRUE">Geographic</type><geogcsn Sync="TRUE">GCS_WGS_1984</geogcsn><csUnits Sync="TRUE">Angular Unit: Degree (0.017453)</csUnits><peXml Sync="TRUE">&lt;GeographicCoordinateSystem xsi:type='typens:GeographicCoordinateSystem' xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance' xmlns:xs='http://www.w3.org/2001/XMLSchema' xmlns:typens='http://www.esri.com/schemas/ArcGIS/10.3'&gt;&lt;WKT&gt;GEOGCS[&amp;quot;GCS_WGS_1984&amp;quot;,DATUM[&amp;quot;D_WGS_1984&amp;quot;,SPHEROID[&amp;quot;WGS_1984&amp;quot;,6378137.0,298.257223563]],PRIMEM[&amp;quot;Greenwich&amp;quot;,0.0],UNIT[&amp;quot;Degree&amp;quot;,0.0174532925199433],AUTHORITY[&amp;quot;EPSG&amp;quot;,4326]]&lt;/WKT&gt;&lt;XOrigin&gt;-400&lt;/XOrigin&gt;&lt;YOrigin&gt;-400&lt;/YOrigin&gt;&lt;XYScale&gt;11258999068426.238&lt;/XYScale&gt;&lt;ZOrigin&gt;-100000&lt;/ZOrigin&gt;&lt;ZScale&gt;10000&lt;/ZScale&gt;&lt;MOrigin&gt;-100000&lt;/MOrigin&gt;&lt;MScale&gt;10000&lt;/MScale&gt;&lt;XYTolerance&gt;8.983152841195215e-009&lt;/XYTolerance&gt;&lt;ZTolerance&gt;0.001&lt;/ZTolerance&gt;&lt;MTolerance&gt;0.001&lt;/MTolerance&gt;&lt;HighPrecision&gt;true&lt;/HighPrecision&gt;&lt;LeftLongitude&gt;-180&lt;/LeftLongitude&gt;&lt;WKID&gt;4326&lt;/WKID&gt;&lt;LatestWKID&gt;4326&lt;/LatestWKID&gt;&lt;/GeographicCoordinateSystem&gt;</peXml></coordRef></DataProperties><SyncDate>20171020</SyncDate><SyncTime>14260600</SyncTime><ModDate>20171020</ModDate><ModTime>14260600</ModTime></Esri><dataIdInfo><envirDesc Sync="TRUE">Microsoft Windows 7 Version 6.1 (Build 7601) Service Pack 1; Esri ArcGIS 10.3.1.4959</envirDesc><dataLang><languageCode value="nob" Sync="TRUE"></languageCode><countryCode value="NOR" Sync="TRUE"></countryCode></dataLang><idCitation><resTitle Sync="TRUE">Kompl_homnr</resTitle><presForm><PresFormCd value="005" Sync="TRUE"></PresFormCd></presForm></idCitation><spatRpType><SpatRepTypCd value="001" Sync="TRUE"></SpatRepTypCd></spatRpType></dataIdInfo><mdLang><languageCode value="nob" Sync="TRUE"></languageCode><countryCode value="NOR" Sync="TRUE"></countryCode></mdLang><mdChar><CharSetCd value="004" Sync="TRUE"></CharSetCd></mdChar><distInfo><distFormat><formatName Sync="TRUE">Shapefile</formatName></distFormat><distTranOps><transSize Sync="TRUE">0.000</transSize></distTranOps></distInfo><mdHrLv><ScopeCd value="005" Sync="TRUE"></ScopeCd></mdHrLv><mdHrLvName Sync="TRUE">dataset</mdHrLvName><refSysInfo><RefSystem><refSysID><identCode code="4326" Sync="TRUE"></identCode><idCodeSpace Sync="TRUE">EPSG</idCodeSpace><idVersion Sync="TRUE">8.6.2</idVersion></refSysID></RefSystem></refSysInfo><spatRepInfo><VectSpatRep><geometObjs Name="Kompl_homnr"><geoObjTyp><GeoObjTypCd value="002" Sync="TRUE"></GeoObjTypCd></geoObjTyp><geoObjCnt Sync="TRUE">0</geoObjCnt></geometObjs><topLvl><TopoLevCd value="001" Sync="TRUE"></TopoLevCd></topLvl></VectSpatRep></spatRepInfo><spdoinfo><ptvctinf><esriterm Name="Kompl_homnr"><efeatyp Sync="TRUE">Simple</efeatyp><efeageom code="4" Sync="TRUE"></efeageom><esritopo Sync="TRUE">FALSE</esritopo><efeacnt Sync="TRUE">0</efeacnt><spindex Sync="TRUE">FALSE</spindex><linrefer Sync="TRUE">FALSE</linrefer></esriterm></ptvctinf></spdoinfo><eainfo><detailed Name="Kompl_homnr"><enttyp><enttypl Sync="TRUE">Kompl_homnr</enttypl><enttypt Sync="TRUE">Feature Class</enttypt><enttypc Sync="TRUE">0</enttypc></enttyp><attr><attrlabl Sync="TRUE">FID</attrlabl><attalias Sync="TRUE">FID</attalias><attrtype Sync="TRUE">OID</attrtype><attwidth Sync="TRUE">4</attwidth><atprecis Sync="TRUE">0</atprecis><attscale Sync="TRUE">0</attscale><attrdef Sync="TRUE">Internal feature number.</attrdef><attrdefs Sync="TRUE">Esri</attrdefs><attrdomv><udom Sync="TRUE">Sequential unique whole numbers that are automatically generated.</udom></attrdomv></attr><attr><attrlabl Sync="TRUE">Shape</attrlabl><attalias Sync="TRUE">Shape</attalias><attrtype Sync="TRUE">Geometry</attrtype><attwidth Sync="TRUE">0</attwidth><atprecis Sync="TRUE">0</atprecis><attscale Sync="TRUE">0</attscale><attrdef Sync="TRUE">Feature geometry.</attrdef><attrdefs Sync="TRUE">Esri</attrdefs><attrdomv><udom Sync="TRUE">Coordinates defining the features.</udom></attrdomv></attr><attr><attrlabl Sync="TRUE">OBJECTID</attrlabl><attalias Sync="TRUE">OBJECTID</attalias><attrtype Sync="TRUE">Integer</attrtype><attwidth Sync="TRUE">10</attwidth><atprecis Sync="TRUE">10</atprecis><attscale Sync="TRUE">0</attscale></attr><attr><attrlabl Sync="TRUE">HAVOMR</attrlabl><attalias Sync="TRUE">HAVOMR</attalias><attrtype Sync="TRUE">String</attrtype><attwidth Sync="TRUE">50</attwidth><atprecis Sync="TRUE">0</atprecis><attscale Sync="TRUE">0</attscale></attr></detailed></eainfo><mdDateSt Sync="TRUE">20171020</mdDateSt></metadata>

intercatch/wgcse_2019/data/areas.csv

@@ -0,0 +1,10 @@
+# maps area definitions. Some of these may be inexact matches, should be inspected by plotting catch coordinates from logbooks
+ICESareatype	ICESarea	FDIRarea
+Div	27.4.b	41
+Div	27.4.c	40
+Div	27.4.a	42
+Div	27.4.a	28
+Div	27.4.a	08
+Div	27.3.a	09
+Div	27.6.b	47
+Div	27.6.a	43

intercatch/wgcse_2019/data/assembly.csv

@@ -0,0 +1,75 @@
+assembly	HOVEDART_FAO
+#torsk
+DEF	COD
+#sei
+DEF	POK
+#hyse
+DEF	HAD
+#selttvar
+DEF	BLL
+#lysing
+DEF	HKE
+#lange
+DEF	LIN
+#breifalbb
+DEF	MON
+#breifalbb
+DEF	ANF
+#r�dspette
+DEF	PLE
+#gr�steinbit
+DEF	CAA
+#bl�steinbit
+DEF	CAB
+#flekksteinbit
+DEF	CAS
+#sm�rflyndre
+DEF	WIT
+#brosme
+DEF	USK
+#piggvar
+DEF	TUR
+#lyr
+DEF	POL
+#gapeflyndre
+DEF	PAL
+#glassvar
+DEF	MEG
+#tunge
+DEF	SOL
+#lomre
+DEF	LEM
+#kveite
+DEF	HAL
+#sandflyndre
+DEF	DAB
+#hvitting
+DEF	WHG
+#bl�kveite
+DEF	GHL
+#dyphavsreke pandalus
+CRU	PAN
+#dyphavsreke
+CRU	PRA
+#sj�kreps
+CRU	NEP
+#
+# for WGNSSK
+# add MIS for that which is not DEF, CRU or FIF
+#
+#sild
+MIS	HER
+#makrell
+MIS	MAC
+#Pink cusk-eel*
+MIS	CUS
+$tobis
+MIS	SAN
+#skate og rokke
+MIS	SRX
+#annen fisk
+MIS	MZZ
+#kolmule
+MIS	WHB
+#kr�kebolle
+MIS	URC

intercatch/wgcse_2019/data/fleet.csv

@@ -0,0 +1,178 @@
+# lists which metier to distribute catches on based on logbooks. these are specific to ICES areas
+# list for WKNSSK
+metier	REDSKAP_FAO	MASKEVIDDE	ICESarea	ICESareatype
+GNS_DEF_all_0_0_all	GEN	1	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	63	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	66	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	74	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	94	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	74	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	75	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	150	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	180	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	90	27.4.a	Div
+GNS_DEF_all_0_0_all	GN	148	27.4.a	Div
+GNS_DEF_all_0_0_all	GNS	76	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	76	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	84	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	85	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	90	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	93	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	126	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	132	27.4.a	Div
+GNS_DEF_all_0_0_all	GNS	138	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	140	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	148	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	150	27.4.a	Div
+GNS_DEF_all_0_0_all	GNS	162	27.4.a	Div
+GNS_DEF_all_0_0_all	GNS	163	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	168	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	169	27.4.a	Div
+GNS_DEF_all_0_0_all	GEN	180	27.4.a	Div
+GNS_DEF_all_0_0_all	GNS	190	27.4.a	Div
+OTB_CRU_16-31_0_0_all	OTB	16	27.4.a	Div
+OTB_CRU_16-31_0_0_all	OTB	18	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TBS	18	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TBS	26	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TBS	20	27.4.a	Div
+OTB_CRU_16-31_0_0_all	OTB	20	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TB	20	27.4.a	Div
+OTB_CRU_16-31_0_0_all	OTB	22	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TB	24	27.4.a	Div
+OTB_CRU_16-31_0_0_all	TBS	30	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TB	34	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	35	27.4.a	Div
+OTB_CRU_32-69_0_0_all	OTB	35	27.4.a	Div
+OTB_CRU_32-69_0_0_all	OTB	36	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	36	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TB	38	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TB	40	27.4.a	Div
+OTB_CRU_32-69_0_0_all	OTB	38	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	38	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	40	27.4.a	Div
+OTB_CRU_32-69_0_0_all	OTB	40	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	42	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	46	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	50	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TB	50	27.4.a	Div
+OTB_CRU_32-69_0_0_all	TBS	60	27.4.a	Div
+OTB_CRU_32-69_0_0_all	OTB	60	27.4.a	Div
+OTB_DEF_>=120_0_0_all	TB	120	27.4.a	Div
+OTB_DEF_>=120_0_0_all	OTB	120	27.4.a	Div
+OTB_DEF_>=120_0_0_all	OTB	125	27.4.a	Div
+OTB_DEF_>=120_0_0_all	OTT	125	27.4.a	Div
+OTB_DEF_>=120_0_0_all	OTB	130	27.4.a	Div
+OTB_DEF_>=120_0_0_all	OTB	135	27.4.a	Div
+OTB_DEF_>=120_0_0_all	TBS	300	27.4.a	Div
+OTB_DEF_>=120_0_0_all	PT	120	27.4.a	Div
+OTB_DEF_>=120_0_0_all	PTB	120	27.4.a	Div
+OTB_DEF_>=120_0_0_all	PTB	125	27.4.a	Div
+LLS_FIF_0_0_0_all	LL	NON	27.4.a	Div
+LLS_FIF_0_0_0_all	LLS	NON	27.4.a	Div
+SDN_DEF_>=120_0_0_all	SSC	120	27.4.a	Div
+SDN_DEF_>=120_0_0_all	SV	120	27.4.a	Div
+SDN_DEF_>=120_0_0_all	SV	130	27.4.a	Div
+SDN_DEF_>=120_0_0_all	SSC	125	27.4.a	Div
+SDN_DEF_>=120_0_0_all	SSC	2180	27.4.a	Div
+MIS_MIS_0_0_0_HC	TBS	2	27.4.a	Div
+MIS_MIS_0_0_0_HC	TBS	3	27.4.a	Div
+MIS_MIS_0_0_0_HC	TBS	4	27.4.a	Div
+MIS_MIS_0_0_0_HC	TBS	5	27.4.a	Div
+MIS_MIS_0_0_0_HC	TB	5	27.4.a	Div
+MIS_MIS_0_0_0_HC	OTB	6	27.4.a	Div
+MIS_MIS_0_0_0_HC	TB	8	27.4.a	Div
+MIS_MIS_0_0_0_HC	TBS	10	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	5	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	10	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	30	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	32	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	34	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	40	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	44	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	50	27.4.a	Div
+MIS_MIS_0_0_0_HC	OTM	16	27.4.a	Div
+MIS_MIS_0_0_0_HC	OTM	40	27.4.a	Div
+MIS_MIS_0_0_0_HC	PS	15	27.4.a	Div
+MIS_MIS_0_0_0_HC	PS1	38	27.4.a	Div
+MIS_MIS_0_0_0_HC	TM	120	27.4.a	Div
+#
+OTB_CRU_16-31_0_0_all	OTB	16	27.4.b	Div
+OTB_CRU_16-31_0_0_all	TBS	26	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TBS	35	27.4.b	Div
+OTB_CRU_32-69_0_0_all	OTB	35	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TBS	36	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TB	38	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TB	40	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TBS	42	27.4.b	Div
+OTB_CRU_32-69_0_0_all	TB	50	27.4.b	Div
+OTB_DEF_>=120_0_0_all	TBS	300	27.4.b	Div
+OTB_DEF_>=120_0_0_all	TB	120	27.4.b	Div
+OTB_DEF_>=120_0_0_all	OTB	120	27.4.b	Div
+OTB_DEF_>=120_0_0_all	OTB	125	27.4.b	Div
+OTB_DEF_>=120_0_0_all	OTB	130	27.4.b	Div
+OTB_DEF_>=120_0_0_all	OTB	135	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	76	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	84	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	85	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	90	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	150	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	165	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	169	27.4.b	Div
+GNS_DEF_all_0_0_all	GEN	180	27.4.b	Div
+LLS_FIF_0_0_0_all	LL	NON	27.4.b	Div
+LLS_FIF_0_0_0_all	LLS	NON	27.4.b	Div
+SDN_DEF_>=120_0_0_all	SSC	120	27.4.b	Div
+MIS_MIS_0_0_0_HC	TM	44	27.4.b	Div
+MIS_MIS_0_0_0_HC	TB	5	27.4.b	Div
+MIS_MIS_0_0_0_HC	TB	8	27.4.b	Div
+#
+LLS_FIF_0_0_0_all	LL	NON	27.3.a	Div
+LLS_FIF_0_0_0_all	LLS	NON	27.3.a	Div
+OTB_CRU_16-31_0_0_all	OTB	16	27.3.a	Div
+OTB_CRU_16-31_0_0_all	TBS	26	27.3.a	Div
+OTB_CRU_16-31_0_0_all	OTB	28	27.3.a	Div
+OTB_CRU_16-31_0_0_all	TBS	20	27.3.a	Div
+OTB_CRU_16-31_0_0_all	TBS	30	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	35	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	35	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	38	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TB	40	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	40	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	42	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	45	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	50	27.3.a	Div
+OTB_CRU_32-69_0_0_all	OTB	60	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	36	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	37	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	38	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBN	38	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	40	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	42	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	46	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	50	27.3.a	Div
+OTB_CRU_32-69_0_0_all	TBS	60	27.3.a	Div
+OTB_CRU_90-119_0_0_all	TBN	90	27.3.a	Div
+OTB_CRU_90-119_0_0_all	OTB	90	27.3.a	Div
+OTB_DEF _>=120_0_0_all	OTB	120	27.3.a	Div
+OTB_DEF _>=120_0_0_all	OTB	125	27.3.a	Div
+OTB_DEF _>=120_0_0_all	TB	120	27.3.a	Div
+OTB_DEF _>=120_0_0_all	TB	125	27.3.a	Div
+OTB_DEF _>=120_0_0_all	OTB	130	27.3.a	Div
+OTB_DEF _>=120_0_0_all	OTB	135	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	63	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	66	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	74	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	76	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	90	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	140	27.3.a	Div
+GNS_DEF_all_0_0_all	GEN	180	27.3.a	Div
+SDN_DEF_>=120_0_0_all	SSC	125	27.3.a	Div
+MIS_MIS_0_0_0_HC	SV	0	27.3.a	Div
+MIS_MIS_0_0_0_HC	TBS	4	27.3.a	Div
+MIS_MIS_0_0_0_HC	TBS	5	27.3.a	Div
+#
+LLS_FIF_0_0_0_all	LLS	NON	27.6.a	Div
+LLS_FIF_0_0_0_all	LL	NON	27.6.a	Div
+#
+LLS_FIF_0_0_0_all	LLS	NON	27.6.b	Div
+LLS_FIF_0_0_0_all	LL	NON	27.6.b	Div

intercatch/wgcse_2019/data/fleet_wo_logbook.csv

@@ -0,0 +1,39 @@
+#list metier assignments based on landings only
+metier	REDSKAP_NS	ICESarea	ICESareatype
+OTB_DEF_>=120_0_0_all	51	27.4.a	Div
+OTB_DEF_>=120_0_0_all	52	27.4.a	Div
+OTB_DEF_>=120_0_0_all	58	27.4.a	Div
+OTB_CRU_32-69_0_0_all	55	27.4.a	Div
+OTB_CRU_70-89_2_35_all	57	27.4.a	Div
+GNS_DEF_all_0_0_all	20	27.4.a	Div
+GNS_DEF_all_0_0_all	21	27.4.a	Div
+GNS_DEF_all_0_0_all	22	27.4.a	Div
+LLS_FIF_0_0_0_all	32	27.4.a	Div
+LLS_FIF_0_0_0_all	35	27.4.a	Div
+SDN_DEF_>=120_0_0_all	61	27.4.a	Div
+FPO_CRU_0_0_0_all	42	27.4.a	Div
+MIS_MIS_0_0_0_HC	41	27.4.a	Div
+MIS_MIS_0_0_0_HC	11	27.4.a	Div
+MIS_MIS_0_0_0_HC	14	27.4.a	Div
+MIS_MIS_0_0_0_HC	33	27.4.a	Div
+MIS_MIS_0_0_0_HC	80	27.4.a	Div
+MIS_MIS_0_0_0_HC	83	27.4.a	Div
+#
+GNS_DEF_all_0_0_all	22	27.4.b	Div
+#
+OTB_DEF_>=120_0_0_all	51	27.3.a	Div
+OTB_DEF_>=120_0_0_all	52	27.3.a	Div
+OTB_CRU_32-69_0_0_all	55	27.3.a	Div
+OTB_CRU_70-89_2_35_all	57	27.3.a	Div
+GNS_DEF_all_0_0_all	21	27.3.a	Div
+GNS_DEF_all_0_0_all	22	27.3.a	Div
+LLS_FIF_0_0_0_all	32	27.3.a	Div
+SDN_DEF_>=120_0_0_all	61	27.3.a	Div
+MIS_MIS_0_0_0_HC	41	27.3.a	Div
+MIS_MIS_0_0_0_HC	42	27.3.a	Div
+MIS_MIS_0_0_0_HC	11	27.3.a	Div
+MIS_MIS_0_0_0_HC	33	27.3.a	Div
+MIS_MIS_0_0_0_HC	34	27.3.a	Div
+MIS_MIS_0_0_0_HC	80	27.3.a	Div
+#
+LLS_FIF_0_0_0_all	35	27.6.a	Div

intercatch/wgcse_2019/data/stocks.csv

@@ -0,0 +1,13 @@
+#defining stocks by species and area, an indicate wheter coastal areas should be included in stock definition, and whether BMS should be calculated based on usage (anvendelse)
+stocckcode	FAOcode	ICESareatype	ICESarea	includecoast	BMShuc
+#cod.27.6a	COD	Div	27.6.a	T	F
+#cod.27.6b	COD	Div	27.6.b	T	F
+#had.27.6b	HAD	Div	27.6.b	T	F
+#anf.27.3a46	ANF	Div	27.3.a	T	F
+#anf.27.3a46	ANF	Div	27.4.c	T	F
+#anf.27.3a46	ANF	Div	27.4.b	T	F
+#anf.27.3a46	ANF	Div	27.4.a	T	F
+#anf.27.3a46	ANF	Div	27.4.b	T	F
+lez.27.4a6a	LEZ	Div	27.4.a	T	F
+lez.27.4a6a	LEZ	Div	27.6.a	T	F
+#sol.27.20-24	SOL	Div	27.3.a	T	F

intercatch/wgcse_2019/landings_overview.R

@@ -0,0 +1,54 @@
+library(readr)
+library(Rstox)
+library(rgdal)
+
+fdir.polygons <- readOGR("data/Hovedområder_fom_2018/","Homr_2018")
+
+readLssFile <- function(file, encoding="latin1", guessMax = 100000){
+  loc <- readr::default_locale()
+  loc$decimal_mark <- ","
+  loc$encoding <- encoding
+  db <- readr::read_delim(file, delim="|", col_names=T, trim_ws=TRUE, na=c("", "na", "NA"), locale=loc, guess_max = guessMax)
+  return(db)
+}
+
+
+landings <- readLssFile("data/2018.lss")
+landings <- landings[landings$`Fartøynasjonalitet (kode)`=="NOR",]
+
+log <- Rstox::readErsFile("data/FDIR_HI_ERS_2018_PR_2019-03-04.psv")
+
+#Finner ingen landinger for LEZ
+sum(landings$`Art FAO (kode)` == "LEZ")
+#ihht ASFIS skal LEZ være Lepidorhombus spp, i NMD taxa finner jeg glassvar og fireflekket var ved søk på Lepidorhombus
+# Finner glassvar i landinger
+nametab <- table(landings$`Art - FDIR`)
+nametab[order(names(nametab))]
+Lepidorhombus <- landings[landings$`Art - FDIR` == "Glassvar",]
+# Disse er kodet som MEG som er riktig artskode. Rekoder disse i logbøker og landinger:
+landings$`Art FAO (kode)`[landings$`Art FAO (kode)` == "MEG"] <- "LEZ"
+log$FANGSTART_FAO[!is.na(log$FANGSTART_FAO) & log$FANGSTART_FAO == "MEG"] <- "LEZ"
+sum(landings$`Art FAO (kode)` == "LEZ")
+
+#Finner ingen landinger for ANF
+sum(landings$`Art FAO (kode)` == "ANF")
+#artlsiten til direktoratet fører også opp MON og ANG for breiflabber
+sum(landings$`Art FAO (kode)` %in% c("ANF","MON","ANG"))
+ikkeLophiidae <- landings[!(landings$`Art FAO (kode)` %in% c("ANF","MON","ANG")),]
+#ser over om noe av de resterende burde klassifiseres som breiflabb
+nametab <- table(ikkeLophiidae$`Art - FDIR`)
+nametab[order(names(nametab))]
+#rekoder breiflabb
+landings$`Art FAO (kode)`[landings$`Art FAO (kode)` %in% c("ANF","MON","ANG")] <- "ANF"
+log$FANGSTART_FAO[!is.na(log$FANGSTART_FAO) & log$FANGSTART_FAO %in% c("ANF","MON","ANG")] <- "ANF"
+sum(landings$`Art FAO (kode)` == "ANF")
+
+# COD og HAD pleier å være brukt konsistent, så jeg sjekker ikke det noe nærmere.
+
+
+#
+# reduserer logbøker og landinger til arter det skal rapporteres for
+#
+warning("Removing COD and HAD. Arved takes care of that")
+landings <- landings[landings$`Art FAO (kode)` %in% c("ANF", "LEZ", "SOL"),]
+log <- log[log$FANGSTART_FAO %in% c("ANF", "LEZ", "SOL"),]