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Add support for google/gemini-2.5-flash-preview-05-20 model Update API configuration to use OpenRouter instead of direct Gemini API Update README with new model usage example
Add explanatory comments to clarify the purpose of coder.run and run_experiment calls
…ration Add new prompt template and logic to incorporate literature review results into research idea generation process. Also includes saving new ideas separately to track literature-influenced ideas.
- Add nova index API integration for paper search - Enhance generate_ideas with nova index and semantic index options - Update LLM client creation for deepseek and azure models - Add use-literature flag and lit-review-size parameter - Improve error handling and logging in literature review - Add test files for aider integration
Add new --skip-run-experiment flag to skip experiment execution Uncomment and enable saving generated ideas to JSON files Add clarification in lit review prompt to avoid copying ideas
feat: add skip-run-experiment flag and enable idea saving
updated the code and paper write
Add debug flag to limit novel ideas processing and print debug info Update ideas file name from ideas.json to new_ideas.json Add new example command with debug flags to README
fix(plot): handle empty arrays gracefully in loss calculation refactor(launch): add skip-write-paper flag and engine parameter style(experiment): disable torch compile by default
… version) feat(greeting): add name argument support and improve script structure refactor(test): update test files and add new test utilities docs: update README with new experiment commands fix(writeup): improve citation handling and paper structure
… generation - Add launch_scientist_exp2.py for running AI scientist experiments - Create run_exp2_0719.sh script to execute experiment2 - Update README.md with experiment2 instructions - Add generate_ideas_after_paper_review.py for idea generation with literature review
…usion models Add PDF reports, training/validation loss plots, and performance metrics for various experiments including hidden state hierarchy, ngram to word emergence, attention evolution analysis, and diffusion guidance techniques. Includes JSON files with final training metrics for each run.
Add launch script for experiment1 with deepseek-chat model Include experiment1 commands in README Implement generate_ideas_with_proposal_review module
… format - Update prompt template to focus on generating detailed proposals with response letters - Remove unused prev_ideas_string parameter - Change output filename to include version indicator - Clean up commented debug code
refactor(perform_review): clean up whitespace and improve prompt structure docs(readme): update with experiment2_v2 commands chore(gitignore): add new experiment directories
Add script to analyze rating changes between paper versions v1 and v2 Generate GSB distribution and metrics comparison plots Save rating changes and paper changes list to csv files
- Add launch_scientist_exp2_v4.py with improvements over v3 - Add perform_review_v4.py for enhanced paper review functionality - Update gitignore to include new experiment result directories - Add run_exp2_v4_0728.sh script for batch execution - Implement collect_final_result.py for result aggregation
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