Update CANGELOG for release and tweaks to validation and stats genera…

…tion
SPAAM-community · Mar 31, 2023 · e6d7e45 · e6d7e45
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,7 +5,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project follows to [Calendar Versioning](https://calver.org/).
 
-## v23.03: Rocky Necropolis of Pantalica [unreleased]
+## v23.03.0: Rocky Necropolis of Pantalica
 
 ### Added
 

diff --git a/README.md b/README.md
@@ -8,7 +8,7 @@
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3980833.svg)](https://doi.org/10.5281/zenodo.3980833)
 ![check_dataset](https://github.com/spaam-community/AncientMetagenomeDir/workflows/check_dataset/badge.svg)
 [![Joins us on Slack](https://img.shields.io/badge/slack-ancientmetagenomedir-blueviolet)](https://spaam-community.slack.com/channels/ancientmetagenomedir)
-[![latest_release](https://img.shields.io/badge/Latest%20Release-v22.12-yellow)](https://github.com/spaam-community/AncientMetagenomeDir/releases)
+[![latest_release](https://img.shields.io/badge/Latest%20Release-v23.03.0-yellow)](https://github.com/spaam-community/AncientMetagenomeDir/releases)
 
 AncientMetagenomeDir is a community curated resource of lists of all published
 **shotgun**-sequenced ancient metagenome or microbial genome-level enriched samples and libraries.

diff --git a/assets/analysis/prerelease-validation-withintable.R b/assets/analysis/prerelease-validation-withintable.R
@@ -103,9 +103,9 @@ shos_dups <-
   print(n = 1000)
 
 ## Exception allowed: Schuenemann2018/KrauseKyora2018b [resequencing], Krause-Kyora/Lugli [reanalysis], 
-## DeDios2020 [multi-species], Devault2017 [multi-species], Austin2022 [multi species], 
-## Guellil2022 [Multispecies]
-ssin_dup_exceptions <-c("ERS942272","ERS942281","ERS942282","ERS4278128","ERS4278129","ERS4278130","ERS942276","SRS1779840","SRS1779841","SRS1779844","SRS1779846", "SRS13524932", "ERS8968539")
+## DeDios2020 [multi-species], Devault2017 [multi-species], Austin2022 [multi-species], 
+## Guellil2022 [multi-species], Bonczarowska2022 [multi-species]
+ssin_dup_exceptions <-c("ERS942272","ERS942281","ERS942282","ERS4278128","ERS4278129","ERS4278130","ERS942276","SRS1779840","SRS1779841","SRS1779844","SRS1779846", "SRS13524932", "ERS8968539", "ERS9069041", "ERS9069042")
 
 ssin_dups <-
   ssin$archive_accession %>% 

diff --git a/assets/analysis/release-stats-statement-generator.R b/assets/analysis/release-stats-statement-generator.R
@@ -1,8 +1,8 @@
 suppressPackageStartupMessages(library(tidyverse))
 
-previous_tag <- "v22.09"
+previous_tag <- "v22.12.0"
 release_tag <- "master"
-new_release <- "v22.12"
+new_release <- "v23.03.0"
 
 ## SAMPLES
 
@@ -56,7 +56,7 @@ cat("\nRelease", new_release,
        adds_single_samples, "new ancient microbial genomes, and", 
        adds_env_samples, "new ancient environmental samples.",
        "This brings the repository to a total of", 
-       tot_pubs_samples, " publications,",
+       tot_pubs_samples, "publications,",
        tot_microb_samples,  "ancient host-associated metagenome samples,", 
        tot_single_samples,  "ancient microbial genomes, and", 
        tot_env_samples,  "ancient environmental samples\n\nFurthermore, this release adds",