Structural and Functional Genomics Laboratory
PLEWCZYNSKI LAB: Laboratory of Bioinformatics and Computational Genomics (LBCG @ MiNI WUT) Laboratory of Functional and Structural Genomics (LFSG @ CeNT UW)
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ConsensuSV-pipeline
ConsensuSV-pipeline PublicAutomatised pipeline of ConsensuSV workflow.
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- I-SAGE Public
SFGLab/I-SAGE’s past year of commit activity - dcHiChIP Public
dcHiChIP is Nextflow pipeline for analysis of HiChIP data. It supports loop detection, peak calling, TADs, compartments, stripes, motif analysis, and 3D chromatin modeling.
SFGLab/dcHiChIP’s past year of commit activity - pyLoopSage Public
Updated version of the stochastic loop extrusion model: LoopSage with capability to run incredibly fast, parallelized across CPU cores. This package is even more user-friendly and it can be installed via PyPI.
SFGLab/pyLoopSage’s past year of commit activity - RepliSage Public
A software that simulates the dynamics of DNA replication by following a sofisticated Hamiltonian Monte Carlo approach.
SFGLab/RepliSage’s past year of commit activity - enhancer3D Public
SFGLab/enhancer3D’s past year of commit activity - lophos Public
LOPHOS — LOops & Peaks HaplOtype phasing Suite Allele-specific peak & loop phasing for HiChIP data.
SFGLab/lophos’s past year of commit activity
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