PyAutoLabs · Jammy2211 · Jul 24, 2026 · Jul 24, 2026
diff --git a/imaging_ci/cosmics/simulators/data_1_no_ci_or_cti.py b/imaging_ci/cosmics/simulators/data_1_no_ci_or_cti.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallel direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import autocti as ac
 import autocti.plot as aplt

diff --git a/imaging_ci/cosmics/simulators/data_2_cti_no_ci.py b/imaging_ci/cosmics/simulators/data_2_cti_no_ci.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallel direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import autocti as ac
 import autocti.plot as aplt

diff --git a/imaging_ci/cosmics/simulators/data_3_with_ci.py b/imaging_ci/cosmics/simulators/data_3_with_ci.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallel direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import autocti as ac
 import autocti.plot as aplt

diff --git a/imaging_ci/cosmics/simulators/simulate.py b/imaging_ci/cosmics/simulators/simulate.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import autocti as ac
 import autocti.plot as aplt

diff --git a/imaging_ci/profiling/add_cti/parallel_x3.py b/imaging_ci/profiling/add_cti/parallel_x3.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import numpy as np
 from os import path
 import time

diff --git a/imaging_ci/profiling/add_cti/parallel_x3_serial_x3.py b/imaging_ci/profiling/add_cti/parallel_x3_serial_x3.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import numpy as np
 from os import path
 import time

diff --git a/imaging_ci/profiling/add_cti/serial_x3.py b/imaging_ci/profiling/add_cti/serial_x3.py
@@ -7,12 +7,6 @@
  - serial CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import numpy as np
 from os import path
 import time

diff --git a/imaging_ci/profiling/likelihood/parallel_x3.py b/imaging_ci/profiling/likelihood/parallel_x3.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/likelihood/parallel_x3__require.py b/imaging_ci/profiling/likelihood/parallel_x3__require.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/likelihood/parallel_x3_serial_x3.py b/imaging_ci/profiling/likelihood/parallel_x3_serial_x3.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/likelihood/parallel_x3_serial_x3__cti_require.py b/imaging_ci/profiling/likelihood/parallel_x3_serial_x3__cti_require.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/likelihood/serial_x3.py b/imaging_ci/profiling/likelihood/serial_x3.py
@@ -7,12 +7,6 @@
  - serial CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/likelihood/parallel_x1.py b/imaging_ci/profiling/pruning/likelihood/parallel_x1.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/likelihood/parallel_x3.py b/imaging_ci/profiling/pruning/likelihood/parallel_x3.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/likelihood/serial_x1.py b/imaging_ci/profiling/pruning/likelihood/serial_x1.py
@@ -7,12 +7,6 @@
  - parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/parallel_x1.py b/imaging_ci/profiling/pruning/parallel_x1.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/parallel_x3.py b/imaging_ci/profiling/pruning/parallel_x3.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/profiling/pruning/serial_x1.py b/imaging_ci/profiling/pruning/serial_x1.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 from os import path
 import time
 

diff --git a/imaging_ci/simulators/non_uniform/parallel_x3.py b/imaging_ci/simulators/non_uniform/parallel_x3.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/simulators/non_uniform/serial_x3.py b/imaging_ci/simulators/non_uniform/serial_x3.py
@@ -7,12 +7,6 @@
  - serial CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/simulators/uniform/parallel_x1.py b/imaging_ci/simulators/uniform/parallel_x1.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/simulators/uniform/parallel_x3.py b/imaging_ci/simulators/uniform/parallel_x3.py
@@ -7,12 +7,6 @@
  - Parallel CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/simulators/uniform/serial_x1.py b/imaging_ci/simulators/uniform/serial_x1.py
@@ -7,12 +7,6 @@
  - serial CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/simulators/uniform/serial_x3.py b/imaging_ci/simulators/uniform/serial_x3.py
@@ -7,12 +7,6 @@
  - serial CTI is added to the image using a 2 `Trap` species model.
  - The volume filling behaviour in the parallle direction using the `CCD` class.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import json
 from os import path
 import autocti as ac

diff --git a/imaging_ci/temporal/modeling/individual_fits.py b/imaging_ci/temporal/modeling/individual_fits.py
@@ -18,12 +18,6 @@
 The charge injection data is a small cut-out of 30 x 30 pixels, to make CTI calibration run fast for the overview
 script that this data is used for.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import numpy as np
 from os import path
 import autofit as af

diff --git a/imaging_ci/temporal/modeling/individual_temporal.py b/imaging_ci/temporal/modeling/individual_temporal.py
@@ -9,12 +9,6 @@
 
 In this script we load the results of these model fits and estimate how the density evolves linearly with time.
 """
-# %matplotlib inline
-# from pyprojroot import here
-# workspace_path = str(here())
-# %cd $workspace_path
-# print(f"Working Directory has been set to `{workspace_path}`")
-
 import matplotlib.pyplot as plt
 import numpy as np
 from os import path