8185 test refactor 2 #8405

garciadias · 2025-03-28T23:09:35Z

Description

This PR solves items 2 and 3 on #8185 for a few test folders.
I would merge these and proceed with the same type of change in other files if @ericspod approves.

I would like to keep these PRs small, so even if they have the same pattern of changes, merging them bit by bit would make them more manageable.

A few sentences describing the changes proposed in this pull request.

Types of changes

Non-breaking change (fix or new feature that would not break existing functionality).
Breaking change (fix or new feature that would cause existing functionality to change).
New tests added to cover the changes.
Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
In-line docstrings updated.
Documentation updated, tested make html command in the docs/ folder.

…combinations Signed-off-by: R. Garcia-Dias <[email protected]>

…eter combinations Signed-off-by: R. Garcia-Dias <[email protected]>

…nations Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

…tions Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

I, R. Garcia-Dias <[email protected]>, hereby add my Signed-off-by to this commit: 129f778 I, R. Garcia-Dias <[email protected]>, hereby add my Signed-off-by to this commit: ebae4e3 Signed-off-by: R. Garcia-Dias <[email protected]>

for more information, see https://pre-commit.ci

garciadias · 2025-04-01T15:16:13Z

Hi @ericspod,

Could you please review this PR?
I think it is all good to follow your specification on the #8185 issue.
I am sending the modification to these few tests so we can limit the size of the PR.
If you approve, I will proceed with more of these simplifications.

tests/apps/detection/test_box_transform.py

tests/data/meta_tensor/test_meta_tensor.py

tests/networks/blocks/test_patchembedding.py

Signed-off-by: R. Garcia-Dias <[email protected]>

for more information, see https://pre-commit.ci

Signed-off-by: R. Garcia-Dias <[email protected]>

for more information, see https://pre-commit.ci

Signed-off-by: R. Garcia-Dias <[email protected]>

…er test case generation Signed-off-by: R. Garcia-Dias <[email protected]>

…e generation Signed-off-by: R. Garcia-Dias <[email protected]>

… generation Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

…est case generation Signed-off-by: R. Garcia-Dias <[email protected]>

…oduct for cleaner test case generation Signed-off-by: R. Garcia-Dias <[email protected]>

…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

…r generation Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

for more information, see https://pre-commit.ci

…r generation Signed-off-by: R. Garcia-Dias <[email protected]>

…leaner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…ner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…ner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…generation Signed-off-by: R. Garcia-Dias <[email protected]>

…MONAI into 8185-test-refactor-2

…neration Signed-off-by: R. Garcia-Dias <[email protected]>

…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…for cleaner generation Signed-off-by: R. Garcia-Dias <[email protected]>

…ner test generation Signed-off-by: R. Garcia-Dias <[email protected]>

…r test generation Signed-off-by: R. Garcia-Dias <[email protected]>

…or cleaner test generation Signed-off-by: R. Garcia-Dias <[email protected]>

…er test generation Signed-off-by: R. Garcia-Dias <[email protected]>

…r test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

Co-authored-by: Eric Kerfoot <[email protected]> Signed-off-by: Rafael Garcia-Dias <[email protected]>

Signed-off-by: R. Garcia-Dias <[email protected]>

garciadias and others added 12 commits February 27, 2025 15:59

Merge branch 'dev' into 8185-test-refactor-2

57d7b09

Merge remote-tracking branch 'upstream/dev' into 8185-test-refactor-2

5342cba

Refactor self-attention test cases to use dict_product for parameter …

0139125

…combinations Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor PatchEmbeddingBlock test cases to use dict_product for param…

836cf6e

…eter combinations Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor RetinaNet test cases to use dict_product for parameter combi…

b2ccb26

…nations Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test_meta_tensor to use dict_product for parameter combinations

0735dfd

Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test_box_transform to use dict_product for parameter combina…

45622d4

…tions Signed-off-by: R. Garcia-Dias <[email protected]>

Autofix

129f778

Fix mypy error

ebae4e3

Fix missing parameter

482e5bf

Signed-off-by: R. Garcia-Dias <[email protected]>

[pre-commit.ci] auto fixes from pre-commit.com hooks

c06cad1

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ericspod reviewed Apr 4, 2025

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tests/apps/detection/test_box_transform.py Outdated Show resolved Hide resolved

ericspod reviewed Apr 4, 2025

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tests/data/meta_tensor/test_meta_tensor.py Outdated Show resolved Hide resolved

ericspod reviewed Apr 4, 2025

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tests/networks/blocks/test_patchembedding.py Outdated Show resolved Hide resolved

garciadias and others added 14 commits April 10, 2025 17:32

revert change to tests/apps/detection/test_box_transform.py

a5596d7

Signed-off-by: R. Garcia-Dias <[email protected]>

redesign dict_product to make more readable

b46ccc0

Signed-off-by: R. Garcia-Dias <[email protected]>

[pre-commit.ci] auto fixes from pre-commit.com hooks

6077ccd

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add license to temporary test

cd5f790

Signed-off-by: R. Garcia-Dias <[email protected]>

fix test param name

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Signed-off-by: R. Garcia-Dias <[email protected]>

Simplify with list comprehension

336b287

Signed-off-by: R. Garcia-Dias <[email protected]>

autofix

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Signed-off-by: R. Garcia-Dias <[email protected]>

N806 not catch locally, but in CI

a9b0fc9

Signed-off-by: R. Garcia-Dias <[email protected]>

dict_product function to accept Iterable[Any] for improved flexibility

d2259b9

Signed-off-by: R. Garcia-Dias <[email protected]>

[pre-commit.ci] auto fixes from pre-commit.com hooks

5922e2a

for more information, see https://pre-commit.ci

autofix

ef2388e

Signed-off-by: R. Garcia-Dias <[email protected]>

Fix test mistakes

016d3b0

Signed-off-by: R. Garcia-Dias <[email protected]>

autofix

ce798d7

Signed-off-by: R. Garcia-Dias <[email protected]>

fix mypy errora

8fad281

Signed-off-by: R. Garcia-Dias <[email protected]>

garciadias and others added 30 commits May 9, 2025 10:39

Refactor TEST_CASE_MaskedAutoEncoderViT to use dict_product for clean…

c3b42bb

…er test case generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test_crossattention to use dict_product for cleaner test cas…

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…e generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor TEST_CASE_RESBLOCK to use dict_product for cleaner test case…

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… generation Signed-off-by: R. Garcia-Dias <[email protected]>

autofix

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Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor TEST_CASE_TRANSFORMERBLOCK to use dict_product for cleaner t…

da9fd6c

…est case generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor TEST_CASE_UNETR_BASIC_BLOCK and TEST_UP_BLOCK to use dict_pr…

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…oduct for cleaner test case generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_dynunet_block to use dict_product for cle…

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…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

autofix

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Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_dynunet.py to use dict_product for cleane…

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…r generation Signed-off-by: R. Garcia-Dias <[email protected]>

revert self attention changes

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Signed-off-by: R. Garcia-Dias <[email protected]>

[pre-commit.ci] auto fixes from pre-commit.com hooks

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for more information, see https://pre-commit.ci

Refactor test cases in test_mednext.py to use dict_product for cleane…

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…r generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_segresnet_ds.py to use dict_product for c…

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Refactor test cases in test_segresnet.py to use dict_product for clea…

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…ner generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_swin_unetr.py to use dict_product for cle…

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…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_transchex.py to use dict_product for clea…

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Refactor test cases in test_unetr.py to use dict_product for cleaner …

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…generation Signed-off-by: R. Garcia-Dias <[email protected]>

Merge branch '8185-test-refactor-2' of https://github.com/garciadias/…

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…MONAI into 8185-test-refactor-2

Refactor test cases in test_vit.py to use dict_product for cleaner ge…

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…neration Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_vitautoenc.py to use dict_product for cle…

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…aner generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_spatial_resampled.py to use dict_product …

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…for cleaner generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_splitdimd.py to use dict_product for clea…

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…ner test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_spacing.py to use dict_product for cleane…

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…r test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_spatial_resample.py to use dict_product f…

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…or cleaner test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_pad_mode.py to use dict_product for clean…

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…er test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Refactor test cases in test_spacing.py to use dict_product for cleane…

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…r test generation Signed-off-by: R. Garcia-Dias <[email protected]>

Remove test_utils.py

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Signed-off-by: R. Garcia-Dias <[email protected]>

Merge remote-tracking branch 'upstream/dev' into 8185-test-refactor-2

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Apply suggestions from code review

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Co-authored-by: Eric Kerfoot <[email protected]> Signed-off-by: Rafael Garcia-Dias <[email protected]>

autofix

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Signed-off-by: R. Garcia-Dias <[email protected]>

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8185 test refactor 2 #8405

8185 test refactor 2 #8405

garciadias commented Mar 28, 2025 •

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garciadias commented Apr 1, 2025

8185 test refactor 2 #8405

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8185 test refactor 2 #8405

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garciadias commented Mar 28, 2025 • edited Loading

Description

Types of changes

garciadias commented Apr 1, 2025

garciadias commented Mar 28, 2025 •

edited

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