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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) | ||
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | ||
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## 1.4dev - [28-Feb-2024] | ||
## 1.4 - [04-Mar-2024] | ||
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### `Added` | ||
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8. Replaced custom GUNZIP module with nf-core/gunzip | ||
9. Replaced custom gt/stat with pfr/gt/stat | ||
10. Replaced custom fasta_validator with nf-core/fastavalidator | ||
11. Removed BIOCODE GFF3 STATS owing to its frequent failures | ||
12. Added pre-commit version checking | ||
13. Now gt/stat reports extended stats and multiple distribution plots have been added to the report | ||
14. Added a tools tab to the report which lists the tools used by the pipeline to create the report | ||
15. Refactored and cleaned data flows for all the custom sub-workflow | ||
16. Started using nf-core template | ||
17. Started using semantic versioning | ||
18. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6' | ||
11. Added pre-commit version checking | ||
12. Now gt/stat reports extended stats and multiple distribution plots have been added to the report | ||
13. Added a tools tab to the report which lists the tools used by the pipeline to create the report | ||
14. Refactored and cleaned data flows for all the custom sub-workflow | ||
15. Started using nf-core template | ||
16. Started using semantic versioning | ||
17. Moved all python depending packages to 'docker.io/gallvp/python3npkgs:v0.6' | ||
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### `Fixed` | ||
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1. All modules are now emitting versioning information | ||
2. Fixed a bug which caused LAI to run with null assembly fasta | ||
3. Fixed FASTA_LTRRETRIEVER_LAI sub-workflow so that it respects `monoploid_ids` parameter. | ||
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### `Dependencies` | ||
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1. NextFlow!>=23.04.0 | ||
2. [email protected] | ||
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### `Deprecated` | ||
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1. Removed BIOCODE GFF3 STATS owing to its frequent failures | ||
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## v1.3 [08-Feb-2023] | ||
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1. Docker engine is now also supported | ||
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