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add celltype annotation functions#325

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ptajvar wants to merge 3 commits intodevfrom
feature/PNA-2293-add-celltype-annotation-functions
Open

add celltype annotation functions#325
ptajvar wants to merge 3 commits intodevfrom
feature/PNA-2293-add-celltype-annotation-functions

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@ptajvar ptajvar commented Mar 24, 2026

Adding functions and data to enable automated annotation of PBMC cells through label transfer from a reference dataset.

Fixes: PNA-2292 and PNA-2293

Type of change

  • New feature (non-breaking change which adds functionality)

How Has This Been Tested?

WIP

PR checklist:

  • This comment contains a description of changes (with reason).
  • I have performed a self-review of my own code
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • I have added tests that prove my fix is effective or that my feature works
  • If a new tool or package is included, I have updated dependencies in pyproject.toml and cited it properly
  • I have checked my code and documentation and corrected any misspellings
  • I have documented any significant changes to the code in CHANGELOG.md

Comment thread src/pixelator/common/annotate/annotate_celltype.py
Comment thread src/pixelator/common/annotate/annotate_celltype.py Outdated
Comment thread src/pixelator/common/annotate/annotate_celltype.py Outdated
Comment thread src/pixelator/common/annotate/annotate_celltype.py Outdated
Comment thread src/pixelator/common/annotate/annotate_celltype.py Outdated
@ptajvar ptajvar force-pushed the feature/PNA-2293-add-celltype-annotation-functions branch from eb786d0 to d5c5ccd Compare April 22, 2026 13:40
@ptajvar ptajvar force-pushed the feature/PNA-2293-add-celltype-annotation-functions branch from d5c5ccd to 649e42b Compare May 7, 2026 12:28
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2 participants