wip

CHANGELOG.md

@@ -44,6 +44,7 @@
  - fixed ui not showing 3p calibrations
  - experiment profiles start now use the unit_api directly. This may mitigate the issue where huey workers stampeding on each other when try to start many jobs.
  - fix `pio calibrations run ... -y` not saving as active.
+ - fix manual dosing in the UI
 
 ### 25.1.21
 

pioreactor/actions/pump.py

@@ -39,15 +39,15 @@ def get_default_calibration() -> structs.SimplePeristalticPumpCalibration:
         hz=250.0,
         dc=95.0,
         voltage=-1,
-        calibration_name="default_pump_calibration",
+        calibration_name="__default_pump_calibration",
         curve_type="poly",
         curve_data_=[0.0911, 0.0],  # 0.0911 is a pretty okay estimate for the slope
         recorded_data={"x": [], "y": []},
     )
 
 
 def is_default_calibration(cal: structs.SimplePeristalticPumpCalibration):
-    return cal.calibration_name == "default_pump_calibration"
+    return cal.calibration_name == "__default_pump_calibration"
 
 
 # Initialize the thread pool with a worker threads.

pioreactor/background_jobs/base.py

@@ -601,7 +601,7 @@ def on_disconnect(client, userdata, flags, reason_code, properties) -> None:
         client = create_client(
             client_id=f"{self.job_name}-sub-{self.unit}-{self.experiment}",
             last_will=last_will,
-            keepalive=120,
+            keepalive=125,
             clean_session=False,  # this, in theory, will reconnect to old subs when we reconnect.
         )
         # we catch exceptions and report them in our software

pioreactor/background_jobs/dosing_automation.py

@@ -174,7 +174,9 @@ class DosingAutomationJob(AutomationJob):
 
     automation_name = "dosing_automation_base"  # is overwritten in subclasses
     job_name = "dosing_automation"
-    published_settings: dict[str, pt.PublishableSetting] = {}
+    published_settings: dict[
+        str, pt.PublishableSetting
+    ] = {}  # see methods in init for dynamic additions, like liquid_volume
 
     previous_normalized_od: Optional[float] = None
     previous_growth_rate: Optional[float] = None

update_scripts/upcoming/update.sql

@@ -3,3 +3,6 @@
 
 CREATE INDEX IF NOT EXISTS stirring_rates_ix
 ON stirring_rates (experiment, pioreactor_unit);
+
+CREATE INDEX IF NOT EXISTS pwm_dcs_ix
+ON pwm_dcs (experiment, pioreactor_unit);