need to restart mqtt and monitor since the location of the db moved;

CHANGELOG.md

@@ -58,6 +58,7 @@
    - DELETE `/api/workers/<pioreactor_unit>/calibrations/<device>/<cal_name>`
    - DELETE `/unit_api/active_calibrations/<device>/<cal_name>`
    - DELETE `/unit_api/calibrations/<device>/<cal_name>`
+   - POST `/unit_api/calibrations/<device>`
  - New API for plugins
    - GET `/api/units/<pioreactor_unit>/plugins/installed`
    - PATCH `/api/units/<pioreactor_unit>/plugins/install`
@@ -83,7 +84,7 @@
  - fixed typo `utils.local_persistant_storage` to `utils.local_persistent_storage`.
  - Kalman Filter database table is no longer populated. There is a way to re-add it, lmk.
  - moved intermittent cache location to `/tmp/pioreactor_cache/local_intermittent_pioreactor_metadata.sqlite`. This also determined by your configuration, see `[storage]`.
-- removed `pioreactor.utils.gpio_helpers`
+ - removed `pioreactor.utils.gpio_helpers`
  - removed `calibrations` export dataset. Use the export option on the /Calibrations page instead.
  - persistent storage is now on single sqlite3 database in `/home/pioreactor/.pioreactor/storage/local_persistent_pioreactor_metadata.sqlite`. This is configurable in your configuration.
  - When checking for calibrations in custom Dosing automations, users may have added:

pioreactor/calibrations/__init__.py

@@ -47,7 +47,7 @@ class SingleVialODProtocol(CalibrationProtocol):
     target_device = "od"
     protocol_name = "single_vial"
 
-    def run(self, *args) -> structs.ODCalibration:
+    def run(self, *args, **kwargs) -> structs.ODCalibration:
         from pioreactor.calibrations.od_calibration import run_od_calibration
 
         return run_od_calibration()
@@ -57,15 +57,15 @@ class BatchVialODProtocol(CalibrationProtocol):
     target_device = "od"
     protocol_name = "batch_vial"
 
-    def run(self, *args) -> structs.ODCalibration:
+    def run(self, *args, **kwargs) -> structs.ODCalibration:
         raise NotImplementedError("Not implemented yet")
 
 
 class DurationBasedPumpProtocol(CalibrationProtocol):
     target_device = ["media_pump", "alt_media_pump", "waste_pump"]
     protocol_name = "duration_based"
 
-    def run(self, target_device: str) -> structs.SimplePeristalticPumpCalibration:
+    def run(self, target_device: str, **kwargs) -> structs.SimplePeristalticPumpCalibration:
         from pioreactor.calibrations.pump_calibration import run_pump_calibration
 
         return run_pump_calibration(target_device)

update_scripts/upcoming/pre_update.sh

@@ -35,4 +35,5 @@ if [ "$HOSTNAME" = "$LEADER_HOSTNAME" ]; then
 
     sudo -u pioreactor pios sync-configs --shared || :
 
+
 fi

update_scripts/upcoming/update.sh

@@ -53,4 +53,9 @@ if [ "$HOSTNAME" = "$LEADER_HOSTNAME" ]; then
     # 8. add yaml mimetype
     echo "application/yaml               yaml yml" | sudo tee -a /etc/mime.types
 
+    # 9. restart monitor and mqtt
+    sudo systemctl daemon-reload
+    sudo systemctl restart pioreactor_startup_run@monitor
+    sudo systemctl restart pioreactor_startup_run@mqtt_to_db_streaming
+
 fi