1.1.0

Minor upgrades and an improved database file handling system. All db files are now created in ~/.unassigner/ by default. The --db_dir option can set this to a non-default location. The --type_strain_fasta option is still available to override this but is deprecated.

What's Changed

• Upgrade docs for commands by @Ulthran in #35
• Replace pairwise2 with PairwiseAligner by @Ulthran in #37
• Put all db files in .unassigner/ by default by @Ulthran in #40

Full Changelog: 1.0.2...1.1.0

1.0.2

Properly bump version in package in line with release. See 1.0.1 for changelog.

Full Changelog: 1.0.1...1.0.2

1.0.1

Minor update to address non-critical code quality issues and upgrade the parse_results function to handle NA values (which unassigner produces sometimes in its results).

What's Changed

• Use #fmt controllers for test_align.py linting by @Ulthran in #29
• Upgrade parse_results to handle NAs by @Ulthran in #31
• 32 address code quality issues in codacy report by @Ulthran in #33

Full Changelog: 1.0.0...1.0.1

1.0.0

What's Changed

• Update LTP to 08_2023 by @Ulthran in #24
• Prep 1.0.0 release by @Ulthran in #27

Full Changelog: 0.0.5...1.0.0

1.0.0.dev2

What's Changed

• Update LTP to 08_2023 by @Ulthran in #24
• Prep 1.0.0 release by @Ulthran in #27

Full Changelog: 0.0.5...1.0.0.dev2

1.0.0.dev1

What's Changed

• Update LTP to 08_2023 by @Ulthran in #24
• Prep 1.0.0 release by @Ulthran in #27

Full Changelog: 0.0.5...1.0.0.dev1

1.0.0.dev0

What's Changed

• Update LTP to 08_2023 by @Ulthran in #24
• Prep 1.0.0 release by @Ulthran in #27

Full Changelog: 0.0.5...1.0.0.dev0

v0.0.5

What's Changed

• Download with python by @kylebittinger in #18
• Variable mismatch rate algorithm by @kylebittinger in #20
• Soft threshold algorithm by @kylebittinger in #21
• Moved to version LTP_09_21 by @ctanes in #22
• Add CI/CD by @Ulthran in #23

New Contributors

• @Ulthran made their first contribution in #23

Full Changelog: 0.0.3...0.0.5

Initial PyPI release

0.0.3

Add long description

Trimragged script release

0.0.2

Fix command-line test