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Merge pull request #21 from PennChopMicrobiomeProgram/20-update-distr…
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Update distributions, 0.1.0 bump
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Ulthran authored May 24, 2024
2 parents c728462 + f938645 commit 09e4dfb
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5 changes: 5 additions & 0 deletions Dockerfile
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FROM python:3.12-slim
WORKDIR /dnabc
COPY . .
RUN pip install --no-cache-dir .
CMD ["bash"]
25 changes: 4 additions & 21 deletions README.md
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[![Tests](https://github.com/PennChopMicrobiomeProgram/dnabc/actions/workflows/pr.yml/badge.svg)](https://github.com/PennChopMicrobiomeProgram/dnabc/actions/workflows/pr.yml)
[![codecov](https://codecov.io/gh/PennChopMicrobiomeProgram/dnabc/graph/badge.svg?token=LB4WAS4S61)](https://codecov.io/gh/PennChopMicrobiomeProgram/dnabc)
[![Codacy Badge](https://app.codacy.com/project/badge/Grade/ead94847cf8540108fa831be4664db0b)](https://app.codacy.com/gh/PennChopMicrobiomeProgram/dnabc/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade)
[![PyPI](https://badge.fury.io/py/dnabc.svg)](https://pypi.org/project/dnabc/)
[![Bioconda](https://anaconda.org/bioconda/dnabc/badges/downloads.svg)](https://anaconda.org/bioconda/dnabc/)
[![DockerHub](https://img.shields.io/docker/pulls/ctbushman/dnabc)](https://hub.docker.com/repository/docker/ctbushman/dnabc/)

Identify DNA barcodes in FASTQ data files and write demultiplexed data.

## Installation

### Pip

```bash
pip install dnabc
dnabc.py -h
```

### Bioconda
### GitHub

```bash
conda create -n dnabc -c conda-forge -c bioconda dnabc
conda activate dnabc
git clone https://github.com/PennChopMicrobiomeProgram/dnabc.git
cd dnabc
pip install .
dnabc.py -h
```

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docker run --rm --name dnabc dnabc dnabc.py -h
```

### GitHub

```bash
git clone https://github.com/PennChopMicrobiomeProgram/dnabc.git
cd dnabc
pip install .
dnabc.py -h
```

## Usage

The Python library provides a command-line program, `dnabc.py`. The
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2 changes: 1 addition & 1 deletion src/dnabc/__init__.py
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__version__ = "0.0.7"
__version__ = "0.1.0"

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