Add CI

.Rbuildignore

@@ -1,4 +1,9 @@
-^.*\.Rproj$
-^\.Rproj\.user$
-^data-raw$
-^README\.Rmd$
+^.*\.Rproj$
+^\.Rproj\.user$
+^data-raw$
+^README\.Rmd$
+^\.github$
+^codecov\.yml$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,46 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: rcmdcheck
+
+      - uses: r-lib/actions/check-r-package@v1

.github/workflows/linter.yaml

@@ -0,0 +1,26 @@
+name: Super-Linter
+
+on:
+  pull_request:
+    branches: [ master, main ]
+  push:
+    branches: [ master, main ]
+
+jobs:
+  lint:
+    name: Lint Code Base
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout Code
+        uses: actions/checkout@v3
+
+      - name: Lint Code Base
+        uses: github/super-linter@v4
+        env:
+          VALIDATE_ALL_CODEBASE: true
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+          VALIDATE_R_LINTR: true
+
+          FILTER_REGEX_INCLUDE: R/.*|tests/.*\.R

.github/workflows/test-coverage.yaml

@@ -0,0 +1,30 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: covr
+
+      - name: Test coverage
+        run: covr::codecov()
+        shell: Rscript {0}

.gitignore

@@ -1,7 +1,7 @@
-.Rproj.user
-.Rhistory
-.RData
-.Ruserdata
-*.Rproj
-
-.DS_store
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+*.Rproj
+
+.DS_store

DESCRIPTION

@@ -1,34 +1,35 @@
-Package: adonisplus
-Type: Package
-Title: Bonus material for the adonis function
-Version: 0.2.0
-Authors@R:
-  c(person(given = "Ceylan",
-           family = "Tanes",
-           email = "[email protected]",
-           role = c("aut", "cre")),
-    person(given = "Kyle",
-           family = "Bittinger",
-           email = "[email protected]",
-           role = c("aut")))
-Description: Contains a tidy method for adonis results, custom permutation
-  functions, and a version of adonis for repeated measures designs.
-License: GPL-3 + file LICENSE
-Encoding: UTF-8
-LazyData: true
-RoxygenNote: 7.2.3
-Imports:
-    generics (>= 0.0.2),
-    rlang,
-    vegan,
-    usedist,
-    dplyr (>= 1.0.0),
-    tibble (>= 3.0.0),
-    ape,
-    magrittr,
-    ggplot2,
-    stringr
-Depends:
-    R (>= 2.10)
-Suggests:
-    testthat
+Package: adonisplus
+Type: Package
+Title: Bonus material for the adonis function
+Version: 0.2.0
+Authors@R:
+  c(person(given = "Ceylan",
+           family = "Tanes",
+           email = "[email protected]",
+           role = c("aut", "cre")),
+    person(given = "Kyle",
+           family = "Bittinger",
+           email = "[email protected]",
+           role = c("aut")))
+Description: Contains a tidy method for adonis results, custom permutation
+  functions, and a version of adonis for repeated measures designs.
+License: GPL-3 + file LICENSE
+Encoding: UTF-8
+LazyData: true
+RoxygenNote: 7.2.3
+Imports:
+    generics (>= 0.0.2),
+    rlang,
+    vegan,
+    usedist,
+    dplyr (>= 1.0.0),
+    tibble (>= 3.0.0),
+    ape,
+    magrittr,
+    ggplot2,
+    stringr
+Depends:
+    R (>= 2.10)
+Suggests:
+    covr,
+    testthat