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Release 1.3
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@PedroMTQ PedroMTQ released this 16 Dec 08:05
· 132 commits to master since this release
1.3
43eb9db

This is a cumulative release of all the features added since 1.2:

  • removed TIGRfams HMMs, since these are included in the NCBI protein family HMMs
  • added gff output
  • changed NOG reference from HMM to Diamond
  • added the option to use GTDB lineages and taxa strings when input organism details (previously it was only NCBI IDs)
  • added lowest common ancestor to convert between GTDB and NCBI
  • metadata is now converted to SQL which increases efficiency at which we retrieve metadata (this is especially useful for very large metadata files)
  • changed config file
  • removed NOG sql files
  • added check_sql option to check if SQL databases are working correctly
  • Removed slurm variables (now Mantis will use all available cores instead of the ones given by slurm, the user should therefore set the amount of cores to be used)
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