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MethBat v0.10.0
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@holtjma holtjma released this 20 Feb 16:20
· 19 commits to main since this release
v0.10.0
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Learn about vigilant mode.

Changes

  • Adds a CLI option --enable-haplotype-segmentation that will run segmentation on the individual haplotypes (H1 and H2) and save those segments in the output BED file. For example, an unmethylated region on haplotype 2 will have the label "H2_Unmethylated" (or "H2_U" if condensed).
  • Adds a CLI option --enable-nodata-segments that will generate segments where haplotype data is missing. These will be flagged like "H1_NoData" (or "H1_ND" if condensed).

The following is an example of how these tracks might look in IGV:
zoomed_example

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