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Probabilistic Models in Biology

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  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML 110 46

  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

    C++ 106 41

  3. limix-backup limix-backup Public

    C++ 45 11

  4. pygp pygp Public

    A Gaussian process toolbox in python

    Python 42 9

  5. deeprvat deeprvat Public

    Python 41 9

  6. deepcpg deepcpg Public

    Forked from cangermueller/deepcpg

    Deep neural networks for predicting CpG methylation

    Python 37 13

Repositories

Showing 10 of 59 repositories
  • segger Public Forked from dpeerlab/segger

    GNN-based cell segmentation of spatial transcriptomics data

    PMBio/segger’s past year of commit activity
    Python 0 7 0 0 Updated Mar 9, 2026
  • LIVI Public

    LIVI is an interpretable deep learning framework that enables trans-eQTL mapping at single-cell resolution.

    PMBio/LIVI’s past year of commit activity
    Python 10 BSD-3-Clause 0 0 0 Updated Mar 4, 2026
  • deRSE-2026-scverse-slides Public

    Slides for deRSE 2026 DFG networking meeting introducing scverse

    PMBio/deRSE-2026-scverse-slides’s past year of commit activity
    SCSS 0 BSD-3-Clause 0 0 0 Updated Mar 2, 2026
  • PMBio/interp-extrap-perturb’s past year of commit activity
    Jinja 6 MIT 2 4 0 Updated Feb 23, 2026
  • Health-Privacy-Challenge Public

    The starter kit for the CAMDA 2026 Health Privacy Challenge.

    PMBio/Health-Privacy-Challenge’s past year of commit activity
    Python 7 GPL-3.0 7 0 1 Updated Jan 21, 2026
  • PMBio/spatialdata-workshops’s past year of commit activity
    Jupyter Notebook 13 BSD-3-Clause 6 5 1 Updated Dec 20, 2025
  • PMBio/polygenic_germline_risk’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 24, 2025
  • GBM_analysis Public

    Notebooks and scripts used to analyse GBM multi-ome atlas

    PMBio/GBM_analysis’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Aug 27, 2025
  • deeprvat Public
    PMBio/deeprvat’s past year of commit activity
    Python 41 9 2 2 Updated Jun 16, 2025
  • bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    PMBio/bicycle’s past year of commit activity
    Jupyter Notebook 36 7 1 0 Updated Jun 3, 2025

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