[WIP] Clean up and organize files into folders

[Copilot]

Repository Cleanup and Organization Plan

Phase 1: Documentation Organization

• Create organized documentation structure in docs/ folder
• Move review/analysis reports to docs/reviews/
• Move implementation summaries to docs/implementation/
• Move user-facing guides to appropriate doc locations
• Keep essential docs (README, CONTRIBUTING, LICENSE) in root

Phase 2: Remove/Consolidate Empty Files

• Remove or populate empty placeholder files (CHANGES, HOTSPOTS, IDEAS)
• Consolidate or remove empty LICENSE file (LICENSE.md already exists)
• Populate CODE_OF_CONDUCT.md or remove if not needed
• Populate SECURITY.md or remove if not needed

Phase 3: Configuration & Artifact Organization

• Move configuration files to appropriate locations
• Review and organize lock files and artifacts
• Update .gitignore for build artifacts

Phase 4: Validation

• Verify all moved files are correctly referenced
• Update any broken links in documentation
• Ensure scripts still work with new structure

Original prompt

---

This section details on the original issue you should resolve

<issue_title>clean up, stand up</issue_title>
<issue_description>```markdown

Clean Up, Stand Up

Raw Body

Markdown ahead and clean up around here, put things in organized folders organize logically

## Comments on the Issue (you are @copilot in this section)

<comments>
</comments>

• Fixes clean up, stand up #152

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Note

Low Risk
Documentation-only changes (file move + content rewrite) with no impact on runtime code, build, or security behavior; main risk is broken links or readers relying on the old root path.

Overview
Moves the Quick Reference card from the repository root into docs/QUICK_REFERENCE.md and replaces the previous mixed container/TUI/task-runner command list with a three-stage bootkit defense quickstart (create SecureBoot media → install & verify → recovery options), including the escalation table, troubleshooting, and key command snippets.

Net effect is documentation-only reorganization: QUICK_REFERENCE.md is removed from the root and the canonical quick reference is now under docs/.

^{Written by Cursor Bugbot for commit 9ce4c11. Configure here.}

[cursor]

Cursor Bugbot has reviewed your changes and found 1 potential issue.

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[cursor]

Relative links broken after moving file into docs/

Medium Severity

The resource links were copied verbatim from the root QUICK_REFERENCE.md into docs/QUICK_REFERENCE.md without adjusting relative paths. Since the file now lives in docs/, the link BOOTKIT_DEFENSE_WORKFLOW.md resolves to docs/BOOTKIT_DEFENSE_WORKFLOW.md (doesn't exist), docs/PROGRESSIVE_RECOVERY.md resolves to docs/docs/PROGRESSIVE_RECOVERY.md (doesn't exist), docs/UUEFI_V3_GUIDE.md resolves to docs/docs/UUEFI_V3_GUIDE.md (doesn't exist), and GETTING_STARTED.md resolves to docs/GETTING_STARTED.md (doesn't exist). All four links are broken.