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Applications page restructure #204

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a23d9ed
applications page
matteopilz May 8, 2025
18d0bd3
applications page
matteopilz May 12, 2025
5bf43f8
Merge branch 'OpenMS:main' into applications_page
matteopilz May 12, 2025
69b4fe4
Merge remote-tracking branch 'origin/applications_page' into applicat…
matteopilz May 12, 2025
ccb103a
moved applications out of baseof.html
matteopilz May 12, 2025
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0 content/en/applications/_index.md → content/en/_applications/_index.md
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0 content/en/applications/diametalyzer.md → content/en/_applications/diametalyzer.md
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0 content/en/applications/diaproteomics.md → content/en/_applications/diaproteomics.md
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0 content/en/applications/epifany.md → content/en/_applications/epifany.md
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0 content/en/applications/flashdeconv.md → content/en/_applications/flashdeconv.md
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0 content/en/applications/flashida.md → content/en/_applications/flashida.md
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0 content/en/applications/flashquant.md → content/en/_applications/flashquant.md
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0 content/en/applications/metaprosip.md → content/en/_applications/metaprosip.md
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0 content/en/applications/mhcquant.md → content/en/_applications/mhcquant.md
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0 content/en/applications/nase.md → content/en/_applications/nase.md
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598 changes: 299 additions & 299 deletions content/en/applications/nuxl.md → content/en/_applications/nuxl.md
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0 content/en/applications/openpepxl.md → content/en/_applications/openpepxl.md
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5 changes: 5 additions & 0 deletions content/en/applications.md
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@@ -0,0 +1,5 @@
---
title: "OpenMS Applications"
type: "applications"
---

3 changes: 2 additions & 1 deletion layouts/_default/baseof.html
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Expand Up @@ -54,8 +54,9 @@
{{ end }}

{{ partial "javascript.html" . }}

{{ partial "analytics.html" . }}


<script src="https://code.jquery.com/jquery-3.7.1.min.js" integrity="sha256-/JqT3SQfawRcv/BIHPThkBvs0OEvtFFmqPF/lYI/Cxo=" crossorigin="anonymous"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js" integrity="sha384-YvpcrYf0tY3lHB60NNkmXc5s9fDVZLESaAA55NDzOxhy9GkcIdslK1eN7N6jIeHz" crossorigin="anonymous"></script>
<script src="https://cdn.jsdelivr.net/npm/swiper@11/swiper-bundle.min.js"></script>
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71 changes: 71 additions & 0 deletions layouts/applications/single.html
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<!DOCTYPE html>
<html lang="{{ .Site.LanguageCode }}">
<head>
<!-- Font Awesome -->
<script async src="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/js/all.min.js"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/all.min.css" />
{{ partial "meta.html" . }}
<title>{{ block "title" . }}{{ .Site.Title }}{{ end }}</title>

<!-- Render theme css -->
{{ partial "css.html" . }}

<!-- Render custom header -->
{{ partial "head.html" . }}

<!-- Refer: https://regisphilibert.com/blog/2018/08/hugo-multilingual-part-1-managing-content-translation/ -->
{{ if .IsTranslated }}
{{ range .Translations }}
<link rel="alternate" hreflang="{{ .Language.Lang }}" href="{{ .RelPermalink }}" title="{{ .Language.LanguageName }}" />
{{ end }}
{{ end }}
{{ template "_internal/twitter_cards.html" . }}
</head>
<body>
<script type="text/javascript">
(function(window, document, dataLayerName, id) {
window[dataLayerName]=window[dataLayerName]||[],window[dataLayerName].push({start:(new Date).getTime(),event:"stg.start"});var scripts=document.getElementsByTagName('script')[0],tags=document.createElement('script');
function stgCreateCookie(a,b,c){var d="";if(c){var e=new Date;e.setTime(e.getTime()+24*c*60*60*1e3),d="; expires="+e.toUTCString()}document.cookie=a+"="+b+d+"; path=/"}
var isStgDebug=(window.location.href.match("stg_debug")||document.cookie.match("stg_debug"))&&!window.location.href.match("stg_disable_debug");stgCreateCookie("stg_debug",isStgDebug?1:"",isStgDebug?14:-1);
var qP=[];dataLayerName!=="dataLayer"&&qP.push("data_layer_name="+dataLayerName),isStgDebug&&qP.push("stg_debug");var qPString=qP.length>0?("?"+qP.join("&")):"";
tags.async=!0,tags.src="https://openms-web.containers.piwik.pro/"+id+".js"+qPString,scripts.parentNode.insertBefore(tags,scripts);
!function(a,n,i){a[n]=a[n]||{};for(var c=0;c<i.length;c++)!function(i){a[n][i]=a[n][i]||{},a[n][i].api=a[n][i].api||function(){var a=[].slice.call(arguments,0);"string"==typeof a[0]&&window[dataLayerName].push({event:n+"."+i+":"+a[0],parameters:[].slice.call(arguments,1)})}}(i[c])}(window,"ppms",["tm","cm"]);
})(window, document, 'dataLayer', 'dc313113-a933-4228-87c2-08bbd48f8786');
</script>

<!-- Preloader. Set to true for front-page fade-in animation -->
{{ if (and .IsHome .Site.Params.fadeFrontPage) }}
<div id="preloader"></div>
{{ end }}

{{ block "navbar" . }}
{{ partial "navbar.html" . }}
{{ partial "navbar-clone.html" . }}
{{ end }}

{{ block "main" . }}
{{ end }}

{{ partial "applications.html" . }}
{{ if .IsPage }}
{{ if eq .File.BaseFileName "applications" }}
<script src="/js/applications.js"></script>
{{ end }}
{{ end }}

<!-- Back To Top Button -->
<div id="backtotop"><a href="#" id="backtotop-color"></a></div>

{{ if .Site.Params.footer }}
{{ partial "footer.html" . }}
{{ end }}

{{ partial "javascript.html" . }}
{{ partial "analytics.html" . }}


<script src="https://code.jquery.com/jquery-3.7.1.min.js" integrity="sha256-/JqT3SQfawRcv/BIHPThkBvs0OEvtFFmqPF/lYI/Cxo=" crossorigin="anonymous"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js" integrity="sha384-YvpcrYf0tY3lHB60NNkmXc5s9fDVZLESaAA55NDzOxhy9GkcIdslK1eN7N6jIeHz" crossorigin="anonymous"></script>
<script src="https://cdn.jsdelivr.net/npm/swiper@11/swiper-bundle.min.js"></script>
</body>
</html>
138 changes: 128 additions & 10 deletions layouts/partials/applications.html
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@@ -1,11 +1,129 @@
{{ range first 1 (or (where .Site.RegularPages "Section" "news") (slice (.Site.GetPage "news"))) }}
{{ $newsLink := default "/news" .Params.newsLink }}
{{ $newsHeader := default .Title .Params.newsHeader }}
{{ $date := .Date.Format "2006-01-02" }}
<div class="news-container">
<div class="news-title"><a href="{{ relURL $newsLink }}"> {{ $newsHeader }}</a></div>
{{ if .Date }}
<div class="news-date"><a href="{{ relURL $newsLink }}">{{ $date }}</a></div>
{{ end }}
<div class="container">
<h2>OpenMS Software Database</h2>
<p>Introduction text explaining how to use this database.</p>

<!-- Search Field -->
<input type="text" id="search" class="search-bar" placeholder="Search tools or applications..." onkeyup="filterItems()" list="tag-suggestions">
<datalist id="tag-suggestions"></datalist>
<div id="category-buttons" class="category-select"></div>
<div id="tag-buttons"></div>
<button id="reset-tags">Reset Tags</button>
<div id="match-count"></div>
<div id="item-list" data-category="All"></div>

</div>
{{ end }}

<style>
.container { max-width: 900px; margin: auto; background: white; padding: 20px; border-radius: 10px; box-shadow: 0 0 10px rgba(0, 0, 0, 0.1); }
h2 { text-align: center; color: #2c3e50; }
p { text-align: center; color: #555; }
.search-bar { width: 100%; padding: 12px; margin-bottom: 15px; border: 1px solid #ccc; border-radius: 5px; font-size: 16px; }
.category-select { display: flex; justify-content: center; gap: 10px; margin-bottom: 15px; }
.category-select button {
padding: 10px 20px; border: none; cursor: pointer; border-radius: 5px;
background-color: #3498db; color: white; font-size: 14px; transition: 0.3s;
}
.category-select button:hover { background-color: #2980b9; }
.tags { display: flex; flex-wrap: wrap; gap: 10px; justify-content: center; margin-bottom: 20px; }

.tag-button {
margin: 4px;
padding: 6px 12px;
font-size: 14px;
border-radius: 4px;
border: none;
background: #bdc3c7;
color: white;
transition: background 0.2s ease;
}

.tag-button.positive {
background: #d4edda;
color: black;
}

.tag-button.negative {
background: #f8d7da;
color: black;
}

.tag-button:hover {
color: black;
}

#tag-buttons {
display: flex;
flex-wrap: wrap;
gap: 6px;
}

.entry-tag {
padding: 3px 8px;
margin: 2px;
border-radius: 12px;
background-color: #e0e0e0;
color: #333;
display: inline-block;
font-size: 0.85em;
cursor: pointer;
}

.entry-tag.positive {
background-color: #d4edda;
color: #155724;
}

.entry-tag.negative {
background-color: #f8d7da;
color: #721c24;
}

.item {
background: white;
border-radius: 10px;
padding: 16px;
margin-bottom: 12px;
box-shadow: 0 2px 6px rgba(0,0,0,0.05);
transition: transform 0.2s ease;
}

.item:hover {
transform: scale(1.01);
cursor: pointer;
}
.item-content { margin-bottom: 10px; }
.item strong {
font-size: 18px;
color: #2c3e50;
}

.item .item-description {
color: #555;
margin-top: 4px;
font-size: 14px;
text-align: left;
}

.item-category { font-size: 14px; padding: 5px 10px; border-radius: 5px; display: inline-block; margin-top: 5px; }
.application { background-color: #3498db; color: white; }
.tool { background-color: #9b59b6; color: white; }
.entry-tags { display: flex; gap: 5px; flex-wrap: wrap; margin-top: 5px; }
.entry-tag { font-size: 12px; padding: 5px 8px; background: #bdc3c7; color: white; border-radius: 4px; }

#match-count {
margin-top: 12px;
font-weight: bold;
color: #555;
}

.filter-bar {
position: sticky;
top: 60px;
background: #fff;
z-index: 10;
padding: 12px 0;
}

</style>

<!--<script>console.log("Partial loaded!")</script>-->
2 changes: 1 addition & 1 deletion generate_bib.py → scripts/generate_bib.py
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Expand Up @@ -28,7 +28,7 @@
urls.append(url)

citations['url'] = urls
with open("content/en/publications.md", "w") as file:
with open("../content/en/publications.md", "w") as file:
file.write(f"# List of OpenMS Publications\n\n")
for year, year_citations in citations.groupby('Year', sort=False):
year = int(year)
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1 change: 1 addition & 0 deletions static/data/tools.json
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