update workflows

.github/workflows/documentation.yml

@@ -51,7 +51,6 @@ jobs:
           sudo wget https://github.com/jgm/pandoc/releases/download/3.1.8/pandoc-3.1.8-1-amd64.deb
           sudo dpkg -i pandoc-3.1.8-1-amd64.deb
 
-      # rm because hextof_workflow notebook can not run outside maxwell
       - name: copy tutorial files to docs
         run: |
           cp -r $GITHUB_WORKSPACE/tutorial $GITHUB_WORKSPACE/docs/
@@ -75,17 +74,12 @@ jobs:
     needs: build
     steps:
       - name: Checkout docs repo
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           repository: ${{ github.repository_owner }}/docs
           token: ${{ secrets.GITHUB_TOKEN }}
           path: 'docs-repo'
 
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v5
-        with:
-          python-version: "3.10"
-
       - name: Setup SSH
         uses: webfactory/[email protected]
         with:

.github/workflows/linting.yml

@@ -15,8 +15,10 @@ jobs:
     steps:
       # Check out repo and set up Python
       - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
 
-# see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
+      # see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
       - name: Fetch test data
         run: |
           eval `ssh-agent -s`
@@ -37,6 +39,7 @@ jobs:
       - name: Install package
         run: |
           uv pip install ".[dev]"
+
       # Linting steps, execute all linters even if one fails
       - name: ruff
         run:

.github/workflows/release.yml

@@ -12,6 +12,12 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "release"
+  cancel-in-progress: false
+
 env:
   UV_SYSTEM_PYTHON: true
 

.github/workflows/testing_coverage.yml

@@ -19,6 +19,8 @@ jobs:
     steps:
       # Check out repo and set up Python
       - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
 
 # see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
       - name: Fetch test data
@@ -40,7 +42,7 @@ jobs:
 
       - name: Install package
         run: |
-          uv pip install ".[dev]"
+          uv pip install -e ".[dev]"
 
       # Run pytest with coverage report, saving to xml
       - name: Run tests on python 3.8

.github/workflows/testing_multiversion.yml

@@ -24,8 +24,10 @@ jobs:
     steps:
       # Check out repo and set up Python
       - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
 
-# see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
+      # see https://stackoverflow.com/questions/57612428/cloning-private-github-repository-within-organisation-in-actions and https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key
       - name: Fetch test data
         run: |
           eval `ssh-agent -s`
@@ -46,7 +48,6 @@ jobs:
         run: |
           uv pip install ".[dev]"
 
-      # Use cached python and dependencies, install poetry
       - name: Run tests on python ${{matrix.python-version}}
         run: |
           pytest --full-trace --show-capture=no -sv -n auto tests/