Merge pull request #69 from OpenCOMPES/remove_links

Remove links

src/specsscan/config/NXmpes_arpes_config.json

@@ -21,7 +21,7 @@
     "address": "['@eln:/ENTRY/User/address', '@attrs:metadata/user0/address']",
     "email": "['@eln:/ENTRY/User/email', '@attrs:metadata/user0/email']"
   },
-  "/ENTRY/geometries/arpes_geometry": {
+  "/ENTRY/geometries/COORDINATE_SYSTEM[arpes_geometry]": {
     "depends_on": "/entry/geometries/arpes_geometry/transformations/rot_y",
     "TRANSFORMATIONS[transformations]": {
       "AXISNAME[rot_y]/@depends_on": ".",
@@ -97,7 +97,7 @@
       "AXISNAME[trans_z]/@units": "mm",
       "AXISNAME[trans_z]/@vector": [0, 0, 1],
       "analyzer_dispersion/@depends_on": "analyzer_rotation",
-      "analyzer_dispersion": "@link:/entry/data/angular1",
+      "analyzer_dispersion": "@data:angular1.data",
       "analyzer_dispersion/@transformation_type": "rotation",
       "analyzer_dispersion/@units": "degrees",
       "analyzer_dispersion/@vector": [1, 0, 0],
@@ -330,10 +330,10 @@
     }
   },
   "/ENTRY/PROCESS[process]/CALIBRATION[energy_calibration]":{
-    "calibrated_axis": "@link:/entry/data/energy"
+    "calibrated_axis": "@data:energy.data"
   },
   "/ENTRY/PROCESS[process]/CALIBRATION[angular0_calibration]":{
-    "calibrated_axis": "@link:/entry/data/angular0"
+    "calibrated_axis": "@data:angular0.data"
   },
   "/ENTRY/data": {
     "@axes": "@data:dims",

src/specsscan/core.py

@@ -256,10 +256,10 @@ def load_scan(
             "/entry/sample/transformations/sample_azimuth": "Azimuth",
         }
 
-        # store link information for resolved axis coordinates
+        # store data for resolved axis coordinates
         for k, v in depends_dict.items():
             if v in axis_dict:
-                self._scan_info[axis_dict[v]] = "@link:/entry/data/" + k
+                self._scan_info[axis_dict[v]] = res_xarray.coords[k].data
 
         for name in res_xarray.dims:
             try: