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@zain-sohail
zain-sohail committed Mar 3, 2025
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16 changes: 8 additions & 8 deletions tutorial/9_hextof_workflow_trXPD.ipynb
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Original file line number Diff line number Diff line change
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"(res_kx_ky/bgd).sel(energy=slice(-31.4,-31.2)).mean('energy').plot(robust=True, ax=ax[0,1], cmap='terrain')\n",
"(res_kx_ky/bgd).sel(energy=slice(-33.6,-33.4)).mean('energy').plot(robust=True, ax=ax[1,0], cmap='terrain')\n",
"(res_kx_ky/bgd).sel(energy=slice(-37.0,-36.0)).mean('energy').plot(robust=True, ax=ax[1,1], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after background normalization',fontsize='18')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after background normalization',fontsize='14')\n",
"\n",
"## XPD normalized by Gaussian-blurred background image\n",
"fig,ax = plt.subplots(2,2,figsize=(6,6), layout='constrained')\n",
"(res_kx_ky/bgd_blur).sel(energy=slice(-30.3,-29.9)).mean('energy').plot(robust=True, ax=ax[0,0], cmap='terrain')\n",
"(res_kx_ky/bgd_blur).sel(energy=slice(-31.4,-31.2)).mean('energy').plot(robust=True, ax=ax[0,1], cmap='terrain')\n",
"(res_kx_ky/bgd_blur).sel(energy=slice(-33.6,-33.4)).mean('energy').plot(robust=True, ax=ax[1,0], cmap='terrain')\n",
"(res_kx_ky/bgd_blur).sel(energy=slice(-37.0,-36.0)).mean('energy').plot(robust=True, ax=ax[1,1], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after Gaussian-blurred background normalization',fontsize='18')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after Gaussian-blurred background normalization',fontsize='14')\n",
"\n",
"## XPD normalized by Gaussian-blurred background image and blurred to improve contrast\n",
"fig,ax = plt.subplots(2,2,figsize=(6,6), layout='constrained')\n",
"(xr.apply_ufunc(gaussian_filter, res_kx_ky/bgd_blur, 1)).sel(energy=slice(-30.3,-29.9)).mean('energy').plot(robust=True, ax=ax[0,0], cmap='terrain')\n",
"(xr.apply_ufunc(gaussian_filter, res_kx_ky/bgd_blur, 1)).sel(energy=slice(-31.4,-31.2)).mean('energy').plot(robust=True, ax=ax[0,1], cmap='terrain')\n",
"(xr.apply_ufunc(gaussian_filter, res_kx_ky/bgd_blur, 1)).sel(energy=slice(-33.6,-33.4)).mean('energy').plot(robust=True, ax=ax[1,0], cmap='terrain')\n",
"(xr.apply_ufunc(gaussian_filter, res_kx_ky/bgd_blur, 1)).sel(energy=slice(-37.0,-36.0)).mean('energy').plot(robust=True, ax=ax[1,1], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: resulting Gaussian-blurred XPD patterns',fontsize='18')"
"fig.suptitle(f'Run {run_number}: resulting Gaussian-blurred XPD patterns',fontsize='14')"
]
},
{
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"(W_4f_7/W_4f_7_blur).plot(robust=True, ax=ax[0,1], cmap='terrain')\n",
"(W_4f_5/W_4f_5_blur).plot(robust=True, ax=ax[1,0], cmap='terrain')\n",
"(W_5p/W_5p_blur).plot(robust=True, ax=ax[1,1], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after Gaussian Blur normalization',fontsize='18')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after Gaussian Blur normalization',fontsize='14')\n",
"\n",
"### Apply Gaussian Blur to resulted images to improve contrast\n",
"SB_norm = xr.apply_ufunc(gaussian_filter, SB/SB_blur, 1)\n",
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"W_4f_7_norm.plot(robust=True, ax=ax[0,1], cmap='terrain')\n",
"W_4f_5_norm.plot(robust=True, ax=ax[1,0], cmap='terrain')\n",
"W_5p_norm.plot(robust=True, ax=ax[1,1], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns after Gauss Blur normalization',fontsize='18') "
"fig.suptitle(f'Run {run_number}: XPD patterns after Gauss Blur normalization',fontsize='14') "
]
},
{
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"W_4f_7_bgd_blur.plot(robust=True, ax=ax[2,0], cmap='terrain')\n",
"W_4f_7_nrm2.plot(robust=True, ax=ax[2,1], cmap='terrain')\n",
"W_4f_7_nrm2_blur.plot(robust=True, ax=ax[3,0], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: XPD patterns of W4f7/2 with pre-core level normalization',fontsize='18') "
"fig.suptitle(f'Run {run_number}: XPD patterns of W4f7/2 with pre-core level normalization',fontsize='14') "
]
},
{
Expand All @@ -521,11 +521,11 @@
"metadata": {},
"outputs": [],
"source": [
"fig,ax = plt.subplots(1,3,figsize=(6,4), layout='constrained')\n",
"fig,ax = plt.subplots(1,3,figsize=(6,3), layout='constrained')\n",
"(xr.apply_ufunc(gaussian_filter, res_kx_ky/bgd_blur, 1)).sel(energy=slice(-31.4,-31.2)).mean('energy').plot(robust=True, ax=ax[0], cmap='terrain')\n",
"W_4f_7_norm.plot(robust=True, ax=ax[1], cmap='terrain')\n",
"W_4f_7_nrm2_blur.plot(robust=True, ax=ax[2], cmap='terrain')\n",
"fig.suptitle(f'Run {run_number}: comparison of different normalizations\\nof XPD pattern for W4f 7/2 peak with Gaussian Blur',fontsize='18')"
"fig.suptitle(f'Run {run_number}: comparison of different normalizations\\nof XPD pattern for W4f 7/2 peak with Gaussian Blur',fontsize='14')"
]
},
{
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