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Adding outputevents etl and additional units mappings #15

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Adding outputevents etl and additional units mappings #15

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3 changes: 2 additions & 1 deletion custom_mapping_csv/custom_mapping_list.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,9 @@ gcpt_micro_specimen.csv mimiciv_micro_specimen 2000025501 2000025585 85 specimen
gcpt_micro_resistance.csv mimiciv_micro_resistance 2000025991 2000025994 4 measurement, Meas Value
gcpt_micro_organism.csv mimiciv_micro_organism 2000026001 2000026364 364 measurement, Meas Value
gcpt_micro_microtest.csv mimiciv_micro_microtest 2000028001 2000028034 34 measurement
gcpt_meas_unit.csv mimiciv_meas_unit 2000029001 2000029054 54 measurement, Unit
gcpt_meas_unit.csv mimiciv_meas_unit 2000029001 2000029085 86 measurement, Unit
gcpt_meas_unit.csv mimiciv_meas_wf_unit 2000029901 2000029903 3 measurement, Unit (waveform)
gcpt_meas_chartevents_main.csv mimiciv_meas_chart 2000030001 2000030169 169 measurement, observation, (Meas Value, condition, procedure?)
gcpt_meas_chartevents_value.csv mimiciv_meas_chartevents_value 2000031001 2000031029 29 measurement, Meas Value, condition
gcpt_meas_waveforms.csv mimiciv_meas_wf 2000041001 2000041044 44 measurement (waveform)
gcpt_outputevents.csv mimiciv_outputevents 2000051001 2000051068 68 measurement
32 changes: 32 additions & 0 deletions custom_mapping_csv/gcpt_meas_unit.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -56,3 +56,35 @@
"millisecond",2000029901,"mimiciv_meas_wf_unit","Unit","Unit",,"millisecond","1970-01-01","2099-12-31",,9593,"Maps to","Mapped from","1970-01-01","2099-12-31",
"beats/min",2000029902,"mimiciv_meas_wf_unit","Unit","Unit",,"beats/min","1970-01-01","2099-12-31",,8541,"Maps to","Mapped from","1970-01-01","2099-12-31",
"bel microvolt",2000029903,"mimiciv_meas_wf_unit","Unit","Unit",,"bel microvolt","1970-01-01","2099-12-31",,9461,"Maps to","Mapped from","1970-01-01","2099-12-31",
"I.U.","2000029055","mimiciv_meas_unit","Unit","Unit",,"I.U.","1970-01-01","2099-12-31",,"8718","Maps to","Mapped from","1970-01-01","2099-12-31",
"mg/g","2000029056","mimiciv_meas_unit","Unit","Unit",,"mg/g","1970-01-01","2099-12-31",,"8723","Maps to","Mapped from","1970-01-01","2099-12-31",
"nmol/L","2000029057","mimiciv_meas_unit","Unit","Unit",,"nmol/L","1970-01-01","2099-12-31",,"8736","Maps to","Mapped from","1970-01-01","2099-12-31",
"ug/L","2000029058","mimiciv_meas_unit","Unit","Unit",,"ug/L","1970-01-01","2099-12-31",,"8748","Maps to","Mapped from","1970-01-01","2099-12-31",
"umol/L","2000029059","mimiciv_meas_unit","Unit","Unit",,"umol/L","1970-01-01","2099-12-31",,"8749","Maps to","Mapped from","1970-01-01","2099-12-31",
"mg/L","2000029060","mimiciv_meas_unit","Unit","Unit",,"mg/L","1970-01-01","2099-12-31",,"8751","Maps to","Mapped from","1970-01-01","2099-12-31",
"mmol/L","2000029061","mimiciv_meas_unit","Unit","Unit",,"mmol/L","1970-01-01","2099-12-31",,"8753","Maps to","Mapped from","1970-01-01","2099-12-31",
"mIU/L","2000029062","mimiciv_meas_unit","Unit","Unit",,"mIU/L","1970-01-01","2099-12-31",,"9040","Maps to","Mapped from","1970-01-01","2099-12-31",
"/mm3","2000029063","mimiciv_meas_unit","Unit","Unit",,"/mm3","1970-01-01","2099-12-31",,"8785","Maps to","Mapped from","1970-01-01","2099-12-31",
"min","2000029064","mimiciv_meas_unit","Unit","Unit",,"min","1970-01-01","2099-12-31",,"8550","Maps to","Mapped from","1970-01-01","2099-12-31",
"%","2000029065","mimiciv_meas_unit","Unit","Unit",,"%","1970-01-01","2099-12-31",,"8554","Maps to","Mapped from","1970-01-01","2099-12-31",
"ng/dL","2000029066","mimiciv_meas_unit","Unit","Unit",,"ng/dL","1970-01-01","2099-12-31",,"8817","Maps to","Mapped from","1970-01-01","2099-12-31",
"ng/dl","2000029067","mimiciv_meas_unit","Unit","Unit",,"ng/dl","1970-01-01","2099-12-31",,"8817","Maps to","Mapped from","1970-01-01","2099-12-31",
"NG/DL","2000029068","mimiciv_meas_unit","Unit","Unit",,"NG/DL","1970-01-01","2099-12-31",,"8817","Maps to","Mapped from","1970-01-01","2099-12-31",
"pg","2000029069","mimiciv_meas_unit","Unit","Unit",,"pg","1970-01-01","2099-12-31",,"8564","Maps to","Mapped from","1970-01-01","2099-12-31",
"MOSM/L","2000029070","mimiciv_meas_unit","Unit","Unit",,"MOSM/L","1970-01-01","2099-12-31",,"9591","Maps to","Mapped from","1970-01-01","2099-12-31",
"ug/dL","2000029071","mimiciv_meas_unit","Unit","Unit",,"ug/dL","1970-01-01","2099-12-31",,"8837","Maps to","Mapped from","1970-01-01","2099-12-31",
"uG/DL","2000029072","mimiciv_meas_unit","Unit","Unit",,"uG/DL","1970-01-01","2099-12-31",,"8837","Maps to","Mapped from","1970-01-01","2099-12-31",
"fL","2000029073","mimiciv_meas_unit","Unit","Unit",,"fL","1970-01-01","2099-12-31",,"8583","Maps to","Mapped from","1970-01-01","2099-12-31",
"mg/dL","2000029074","mimiciv_meas_unit","Unit","Unit",,"mg/dL","1970-01-01","2099-12-31",,"8840","Maps to","Mapped from","1970-01-01","2099-12-31",
"MG/DL","2000029075","mimiciv_meas_unit","Unit","Unit",,"MG/DL","1970-01-01","2099-12-31",,"8840","Maps to","Mapped from","1970-01-01","2099-12-31",
"ng/mL","2000029076","mimiciv_meas_unit","Unit","Unit",,"ng/mL","1970-01-01","2099-12-31",,"8842","Maps to","Mapped from","1970-01-01","2099-12-31",
"ng/ml","2000029077","mimiciv_meas_unit","Unit","Unit",,"ng/ml","1970-01-01","2099-12-31",,"8842","Maps to","Mapped from","1970-01-01","2099-12-31",
"nG/ML","2000029078","mimiciv_meas_unit","Unit","Unit",,"nG/ML","1970-01-01","2099-12-31",,"8842","Maps to","Mapped from","1970-01-01","2099-12-31",
"nG/mL","2000029079","mimiciv_meas_unit","Unit","Unit",,"nG/mL","1970-01-01","2099-12-31",,"8842","Maps to","Mapped from","1970-01-01","2099-12-31",
"mL","2000029080","mimiciv_meas_unit","Unit","Unit",,"mL","1970-01-01","2099-12-31",,"8587","Maps to","Mapped from","1970-01-01","2099-12-31",
"pg/mL","2000029081","mimiciv_meas_unit","Unit","Unit",,"pg/mL","1970-01-01","2099-12-31",,"8845","Maps to","Mapped from","1970-01-01","2099-12-31",
"ug/mL","2000029082","mimiciv_meas_unit","Unit","Unit",,"ug/mL","1970-01-01","2099-12-31",,"8859","Maps to","Mapped from","1970-01-01","2099-12-31",
"ug/ml","2000029083","mimiciv_meas_unit","Unit","Unit",,"ug/ml","1970-01-01","2099-12-31",,"8859","Maps to","Mapped from","1970-01-01","2099-12-31",
"#/CU MM","2000029084","mimiciv_meas_unit","Unit","Unit",,"#/CU MM","1970-01-01","2099-12-31",,"8888","Maps to","Mapped from","1970-01-01","2099-12-31",
"L/min","2000029085","mimiciv_meas_unit","Unit","Unit",,"L/min","1970-01-01","2099-12-31",,"8698","Maps to","Mapped from","1970-01-01","2099-12-31",
"ml","2000029086","mimiciv_meas_unit","Unit","Unit",,"ml","1970-01-01","2099-12-31",,"8587","Maps to","Mapped from","1970-01-01","2099-12-31",
69 changes: 69 additions & 0 deletions custom_mapping_csv/gcpt_outputevents.csv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,69 @@
concept_name,source_concept_id,source_vocabulary_id,source_domain_id,source_concept_class_id,standard_concept,concept_code,valid_start_date,valid_end_date,invalid_reason,target_concept_id,relationship_id,reverese_relationship_id,relationship_valid_start_date,relationship_end_date,invalid_reason_cr
Stool,2000051001,mimiciv_outputevents,Measurement,Clinical Observation,,226579,1970-01-01,2099-12-31,,3011087,Maps to,Mapped from,1970-01-01,2099-12-31,
Fecal Bag,2000051002,mimiciv_outputevents,Measurement,Clinical Observation,,226580,1970-01-01,2099-12-31,,3011087,Maps to,Mapped from,1970-01-01,2099-12-31,
Ostomy (output),2000051003,mimiciv_outputevents,Measurement,Clinical Observation,,226582,1970-01-01,2099-12-31,,3011087,Maps to,Mapped from,1970-01-01,2099-12-31,
Rectal Tube,2000051004,mimiciv_outputevents,Measurement,Clinical Observation,,226583,1970-01-01,2099-12-31,,3011087,Maps to,Mapped from,1970-01-01,2099-12-31,
Jejunostomy,2000051005,mimiciv_outputevents,Measurement,Clinical Observation,,226574,1970-01-01,2099-12-31,,3011087,Maps to,Mapped from,1970-01-01,2099-12-31,
Emesis,2000051006,mimiciv_outputevents,Measurement,Clinical Observation,,226571,1970-01-01,2099-12-31,,3028277,Maps to,Mapped from,1970-01-01,2099-12-31,
OR EBL,2000051007,mimiciv_outputevents,Measurement,Clinical Observation,,226626,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Tap,2000051008,mimiciv_outputevents,Measurement,Clinical Observation,,226625,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
T Tube,2000051009,mimiciv_outputevents,Measurement,Clinical Observation,,226603,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Hemovac #1,2000051010,mimiciv_outputevents,Measurement,Clinical Observation,,226604,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Sump #1,2000051011,mimiciv_outputevents,Measurement,Clinical Observation,,226617,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
PACU EBL,2000051012,mimiciv_outputevents,Measurement,Clinical Observation,,226629,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Lumbar,2000051013,mimiciv_outputevents,Measurement,Clinical Observation,,226610,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Hemovac #2,2000051014,mimiciv_outputevents,Measurement,Clinical Observation,,226605,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Sump #2,2000051015,mimiciv_outputevents,Measurement,Clinical Observation,,226618,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Blakemore,2000051016,mimiciv_outputevents,Measurement,Clinical Observation,,226570,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Red Rubber,2000051017,mimiciv_outputevents,Measurement,Clinical Observation,,226622,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Davol,2000051018,mimiciv_outputevents,Measurement,Clinical Observation,,226621,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Anderson,2000051019,mimiciv_outputevents,Measurement,Clinical Observation,,226616,1970-01-01,2099-12-31,,3037537,Maps to,Mapped from,1970-01-01,2099-12-31,
Chest Tube #1,2000051020,mimiciv_outputevents,Measurement,Clinical Observation,,226588,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
Chest Tube #2,2000051021,mimiciv_outputevents,Measurement,Clinical Observation,,226589,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
L Pleural #1,2000051022,mimiciv_outputevents,Measurement,Clinical Observation,,226590,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
R Pleural #1,2000051023,mimiciv_outputevents,Measurement,Clinical Observation,,226593,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
Mediastinal,2000051024,mimiciv_outputevents,Measurement,Clinical Observation,,226592,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
Pericardial,2000051025,mimiciv_outputevents,Measurement,Clinical Observation,,226612,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
L Pleural #2,2000051026,mimiciv_outputevents,Measurement,Clinical Observation,,226591,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
R Pleural #2,2000051027,mimiciv_outputevents,Measurement,Clinical Observation,,226595,1970-01-01,2099-12-31,,3026556,Maps to,Mapped from,1970-01-01,2099-12-31,
Nasogastric,2000051028,mimiciv_outputevents,Measurement,Clinical Observation,,226575,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
Oral Gastric,2000051029,mimiciv_outputevents,Measurement,Clinical Observation,,226576,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
TF Residual,2000051030,mimiciv_outputevents,Measurement,Clinical Observation,,227510,1970-01-01,2099-12-31,,0,Maps to,Mapped from,1970-01-01,2099-12-31,
Gastric Tube,2000051031,mimiciv_outputevents,Measurement,Clinical Observation,,226573,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
TF Residual Output,2000051032,mimiciv_outputevents,Measurement,Clinical Observation,,227511,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
PACU Gastric,2000051033,mimiciv_outputevents,Measurement,Clinical Observation,,226630,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
Anderson (gastric),2000051034,mimiciv_outputevents,Measurement,Clinical Observation,,226569,1970-01-01,2099-12-31,,43533729,Maps to,Mapped from,1970-01-01,2099-12-31,
Jackson Pratt #1,2000051035,mimiciv_outputevents,Measurement,Clinical Observation,,226599,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Drainage Bag,2000051036,mimiciv_outputevents,Measurement,Clinical Observation,,227701,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Wound Vac #1,2000051037,mimiciv_outputevents,Measurement,Clinical Observation,,226613,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
JP Medial,2000051038,mimiciv_outputevents,Measurement,Clinical Observation,,226597,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
JP Lateral,2000051039,mimiciv_outputevents,Measurement,Clinical Observation,,226598,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Jackson Pratt #2,2000051040,mimiciv_outputevents,Measurement,Clinical Observation,,226600,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Pigtail #1,2000051041,mimiciv_outputevents,Measurement,Clinical Observation,,226619,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Cerebral Ventricular #1,2000051042,mimiciv_outputevents,Measurement,Clinical Observation,,226606,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Jackson Pratt #3,2000051043,mimiciv_outputevents,Measurement,Clinical Observation,,226601,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
PACU Drains,2000051044,mimiciv_outputevents,Measurement,Clinical Observation,,226628,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Wound Vac #2,2000051045,mimiciv_outputevents,Measurement,Clinical Observation,,226614,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Jackson Pratt #4,2000051046,mimiciv_outputevents,Measurement,Clinical Observation,,226602,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Pigtail #2,2000051047,mimiciv_outputevents,Measurement,Clinical Observation,,226620,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Cerebral Ventricular #2,2000051048,mimiciv_outputevents,Measurement,Clinical Observation,,226607,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Penrose #1,2000051049,mimiciv_outputevents,Measurement,Clinical Observation,,226623,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Cerebral Subdural #1,2000051050,mimiciv_outputevents,Measurement,Clinical Observation,,226608,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Cerebral Subdural #2,2000051051,mimiciv_outputevents,Measurement,Clinical Observation,,226609,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Penrose #2,2000051052,mimiciv_outputevents,Measurement,Clinical Observation,,226624,1970-01-01,2099-12-31,,3006376,Maps to,Mapped from,1970-01-01,2099-12-31,
Foley,2000051053,mimiciv_outputevents,Measurement,Clinical Observation,,226559,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Void,2000051054,mimiciv_outputevents,Measurement,Clinical Observation,,226560,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
OR Urine,2000051055,mimiciv_outputevents,Measurement,Clinical Observation,,226627,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Pre-Admission,2000051056,mimiciv_outputevents,Measurement,Clinical Observation,,226633,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Condom Cath,2000051057,mimiciv_outputevents,Measurement,Clinical Observation,,226561,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Suprapubic,2000051058,mimiciv_outputevents,Measurement,Clinical Observation,,226563,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Ileoconduit,2000051059,mimiciv_outputevents,Measurement,Clinical Observation,,226584,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
PACU Urine,2000051060,mimiciv_outputevents,Measurement,Clinical Observation,,226631,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Cath Lab,2000051061,mimiciv_outputevents,Measurement,Clinical Observation,,226632,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
R Nephrostomy,2000051062,mimiciv_outputevents,Measurement,Clinical Observation,,226564,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
L Nephrostomy,2000051063,mimiciv_outputevents,Measurement,Clinical Observation,,226565,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
Straight Cath,2000051064,mimiciv_outputevents,Measurement,Clinical Observation,,226567,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
R Ureteral Stent,2000051065,mimiciv_outputevents,Measurement,Clinical Observation,,226557,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
L Ureteral Stent,2000051066,mimiciv_outputevents,Measurement,Clinical Observation,,226558,1970-01-01,2099-12-31,,3014315,Maps to,Mapped from,1970-01-01,2099-12-31,
GU Irrigant/Urine Volume Out,2000051067,mimiciv_outputevents,Measurement,Clinical Observation,,227489,1970-01-01,2099-12-31,,"36308083 ",Maps to,Mapped from,1970-01-01,2099-12-31,
GU Irrigant Volume In,2000051068,mimiciv_outputevents,Measurement,Clinical Observation,,227488,1970-01-01,2099-12-31,,36308083,Maps to,Mapped from,1970-01-01,2099-12-31,
43 changes: 43 additions & 0 deletions etl/etl/cdm_measurement.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -287,3 +287,46 @@ INNER JOIN
WHERE
src.target_domain_id = 'Measurement'
;

-- -------------------------------------------------------------------
-- Rule 4
-- Outputevents
-- -------------------------------------------------------------------

INSERT INTO `@etl_project`.@etl_dataset.cdm_measurement
SELECT
src.measurement_id AS measurement_id,
per.person_id AS person_id,
COALESCE(src.target_concept_id, 0) AS measurement_concept_id,
CAST(src.start_datetime AS DATE) AS measurement_date,
src.start_datetime AS measurement_datetime,
CAST(NULL AS STRING) AS measurement_time,
src.type_concept_id AS measurement_type_concept_id,
CAST(NULL AS INT64) AS operator_concept_id,
src.value_as_number AS value_as_number,
COALESCE(src.value_as_concept_id, 0) AS value_as_concept_id,
CAST(NULL AS INT64) AS unit_concept_id,
CAST(NULL AS INT64) AS range_low,
CAST(NULL AS INT64) AS range_high,
CAST(NULL AS INT64) AS provider_id,
vis.visit_occurrence_id AS visit_occurrence_id,
CAST(NULL AS INT64) AS visit_detail_id,
src.source_code AS measurement_source_value,
src.source_concept_id AS measurement_source_concept_id,
src.unit_source_value AS unit_source_value,
src.value_source_value AS value_source_value,
--
CONCAT('measurement.', src.unit_id) AS unit_id,
src.load_table_id AS load_table_id,
src.load_row_id AS load_row_id,
src.trace_id AS trace_id
FROM
`@etl_project`.@etl_dataset.lk_outputevents_mapped src
INNER JOIN
`@etl_project`.@etl_dataset.cdm_person per
ON CAST(src.subject_id AS STRING) = per.person_source_value
INNER JOIN
`@etl_project`.@etl_dataset.cdm_visit_occurrence vis
ON vis.visit_source_value =
CONCAT(CAST(src.subject_id AS STRING), '|', CAST(src.hadm_id AS STRING))
;
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