Skip to content

Pull requests: NVIDIA/bionemo-framework

New pull request New
103 Open 1,141 Closed
103 Open 1,141 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Pstjohn/llama3 lingua fixes
#1364 opened Dec 4, 2025 by pstjohn Loading…
Bump werkzeug from 3.1.3 to 3.1.4 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1360 opened Dec 2, 2025 by dependabot bot Loading…
1
Bump fonttools from 4.59.0 to 4.61.0 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1359 opened Dec 1, 2025 by dependabot bot Loading…
1
Evo2 Megatron Bridge Recipe Prototype
#1357 opened Dec 1, 2025 by jstjohn • Draft
9 tasks
2
Bump ray from 2.49.2 to 2.52.0 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1352 opened Nov 26, 2025 by dependabot bot Loading…
1
Savitha/add phylo masking to llama3
#1351 opened Nov 26, 2025 by savitha-eng Loading…
5 tasks done
1
demo for bias initialization
#1350 opened Nov 26, 2025 by pstjohn • Draft
1
Pstjohn/te update
#1342 opened Nov 22, 2025 by pstjohn • Draft
1
Remove ESM2, Amplify from 5D. This is now in bionemo-recipes
#1336 opened Nov 20, 2025 by trvachov Loading…
9 tasks
5
Dev/ba/fix evo2 lora test
#1335 opened Nov 20, 2025 by balvisio Loading…
9 tasks
1
Update HF model card
#1333 opened Nov 19, 2025 by ohadmo Loading…
9 tasks
@ohadmo
2
Bump transformers from 4.51.3 to 4.53.0 in /bionemo-recipes/models/geneformer dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1332 opened Nov 19, 2025 by dependabot bot Loading…
1
Adding update that solves one logger issue for Evo2 training
#1331 opened Nov 18, 2025 by jstjohn Loading…
2 of 9 tasks
1
add hf token to framework CI ciflow:skip Skip all CI tests for this PR
#1326 opened Nov 17, 2025 by pstjohn Loading…
2
Evo2 Layer Ablation Study
#1324 opened Nov 15, 2025 by jstjohn • Draft
9 tasks
1
FSDP support in Evo2
#1321 opened Nov 14, 2025 by jstjohn • Draft
9 tasks
1
Training scripts, tests, and config for llama3; very similar to ESM2 …
#1319 opened Nov 12, 2025 by savitha-eng • Draft
9 tasks
8
Add nucleotide tokenizer for llama3 model to recipes
#1314 opened Nov 7, 2025 by savitha-eng Loading…
5 of 9 tasks
7
Use the FusedAdam optimizer from TE
#1313 opened Nov 5, 2025 by pstjohn • Draft
1
begin drafting yaml for fp8 thd jobs ciflow:skip Skip all CI tests for this PR
#1297 opened Oct 29, 2025 by jwilber Loading…
@jwilber
1
bump nemo ciflow:all Run all tests (unit tests, slow tests, and notebooks) for bionemo2 or enforce running all tests
#1296 opened Oct 29, 2025 by farhadrgh Loading…
9 tasks
7
Bump starlette from 0.48.0 to 0.49.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1294 opened Oct 28, 2025 by dependabot bot Loading…
1
feat: benchmark annbatch in scspeedtest
#1290 opened Oct 28, 2025 by ilan-gold Loading…
1 of 9 tasks
7
Bump cryptography from 42.0.8 to 44.0.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1287 opened Oct 28, 2025 by dependabot bot Loading…
1
Bump urllib3 from 1.26.20 to 2.5.0 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1286 opened Oct 28, 2025 by dependabot bot Loading…
1
ProTip! What’s not been updated in a month: updated:<2025-11-05.