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Neuroscience Fundamentals
magnesium2400 edited this page May 8, 2025
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Understanding basic aspects of brain anatomy and evolution are fundamental in neuroscience.
The seminal general text for neuroscience is Kandel, Jessel and Schwartz’s Principles of Neural Science:
Other textbooks:
- Izhikevich, 2007, Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting
- Rao and Jacobson, 2005, Developmental Neurobiology
- Foundas and Mendoza, 2008, Clinical Neuroanatomy
This one in particular is an amazing, incredibly comprehensive resource on neuroanatomy:
Online resources:
- Neurotorium
- A fantastic course for learning neuroanatomy
- An excellent resource for neuroanatomy
- Neurosurgical Atlas - Neuroanatomy
- Intro to Neuroanatomy for Imagers (OHBM blog)
Courses and learning platforms:
- Coursera: Synapses, Neurons and the Brain
- Allen Institute – Neurons Beyond the Textbook
- Human Brain Project MOOCs
- edX: The Multi-Scale Brain
- Jack Terwilliger’s primer on spiking neurons
- Jack Terwilliger’s primer on synapses
- YouTube: Cognitive Neuroscience Course
- Michael Mann – The Nervous System in Action (Online Textbook)
- Neural Reckoning – Computational Neuroscience Resources
- Purves et al. – Neuroscience (NCBI)
- Purves et al. – Neuroscience (Archive.org)
- Paul Meehl’s Lectures on Philosophical Psychology (YouTube)
- List of educational resources for cognitive neuroscience (includes courses, open texts, etc)
- Video Course on Fundamentals of Cognitive Neuroscience (YouTube)
- Nancy Kanwisher's MIT Course on Cognitive Neuroscience
Mathematical Neuroscience:
- Ermentrout and Terman, 2010, Mathematical Foundations of Neuroscience
- Izhikevich, 2007, Dynamical Systems in Neuroscience
Lecture series:
Historical resources:
- Excellent JSTOR article on human brain evolution
- Design Principles of the Human Brain: An Evolutionary Perspective
- The Evolution of Nervous Systems (Comprehensive Text)
Chapters in The Evolution of Nervous Systems worth exploring:
- 3.02 - What Primate Brains Are Made of
- 4.09 - Remarkable, But Not Special: What Human Brains Are Made of
- 3.07 - Evolutionary-Developmental Aspects of Cortical Connectivity
- 1.18 - Functional Correlates of Brain and Brain Region Sizes in Nonmammalian Vertebrates
- 4.12 - Evolutionary Specializations of Human Association Cortex
- 2.09 - Comparative Aspects of Mammalian Cortical Development
- 3.03 - The Expansion of the Cortical Sheet in Primates
- 4.13 - Evolutionary Specializations of the Human Prefrontal Cortex
- 2.15 - White Matter Expansion
- 2.14 - Comparative Structure of the Cerebral Cortex in Large Mammals
- 4.08 - Evolutionary Specializations of Human Brain Microstructure
- 3.22 - The Evolution of the Prefrontal Cortex in Early Primates and Anthropoids
- 4.04 - Energetics, Life History, and Human Brain Evolution
- 3.06 - Scaling Up the Simian Primate Cortex
- 4.11 - Human Association Cortex: Expanded, Untethered, Neotenous, and Plastic
- 4.10 - Evolution of the Human Brain: Design Without a Designer
Books on brain evolution:
- 0.0 Home
- 0.1 Neuroscience fundamentals
- 0.2 Reproducible Science
- 0.3 MRI Physics, BIDS, DICOM, and data formats
- 0.4 Introduction to Diffusion MRI
- 0.5 Introduction to Functional MRI
- 0.6 Measuring functional and effective connectivity
- 0.7 Connectomics, graph theory, and complexity
- 0.8 Statistical and Mathematical Tidbits
- 0.9 Introduction to Psychopathology
- 0.10 Introduction to Genetics and Bioinformatics
- 0.11 Introduction to Programming
- 1.0 Working on the Cluster
- 2.0 Programming Languages
- 2.1 Python
- 2.2 MATLAB
- 2.3 R and RStudio
- 2.4 Programming Intro Exercises
- 2.5 git and GitHub
- 2.6 SLURM and Job Submission
- 3.0 Neuroimaging Tools and Packages
- 3.1 BIDS
- 3.2 FreeSurfer
- 3.2.1 Qdec
- 3.3 FSL
- 3.3.1 ICA-FIX
- 3.4 Connectome Workbench/wb_command
- 3.5 fMRIPrep
- 3.6 QSIPrep
- 3.7 HCP Pipeline
- 3.8 tedana
- 4.0 Quality control
- 4.1 MRIQC
- 4.2 Common Artefacts
- 4.3 T1w
- 4.4 rs-fMRI
- 5.0 Specialist Tools
- 6.0 Putting it all together