pyproject.toml

[project]
authors = [{ name = "Alberto Santos Delgado", email = "albsad@dtu.dk" },
           { name = "Henry Webel", email = "heweb@dtu.dk"}]
name = "vuecore"
dynamic = ["version"]
description = "A Python package for plotting related to multimodal molecular data. Works with acore."
license = { text = "GNU General Public License v3" }
readme = "README.md"
requires-python = ">=3.9,<3.13"
classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Natural Language :: English",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
]

dependencies = [
    "numpy",
    "pandas",
    # "dsp-pandas", # has only pandas related dependencies
    "scipy",
    "plotly",
    # "biopython",
    "beautifulsoup4",
    "requests",
    "dash", # from dash import html
    "networkx",
    "matplotlib",
    "kaleido",
    "pyvis",
    "wordcloud",
    "cyjupyter",
    "nltk",
    "webweb",
    "acore",
    "dash-cytoscape",
]

[project.optional-dependencies]
docs = [
  "sphinx",
  "sphinx-book-theme",
  "myst-nb",
  "ipywidgets",
  "sphinx-new-tab-link!=0.2.2",
  "jupytext",
]
dev = [
  "black",
  "flake8",
  "ruff",
  "isort",
  "pytest",
  "pytest-cov",
  "twine",
  "wheel",
  "jupytext",
  "ipykernel",
]

[project.urls]
Homepage = "https://github.com/Multiomics-Analytics-Group/vuecore"
Issues = "https://github.com/Multiomics-Analytics-Group/vuecore/issues"
Documentation = "https://analytics-core.readthedocs.io/"


[build-system]
requires = ["setuptools", "setuptools_scm>=8"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]