v2.0.1

Changes

• Replaced PlotlyJS with Makie for improved cross-platform compatibility in plotting modules.

v2.0.0

In this release (v2.0.0), scLENS now supports interactive usage within the Julia environment, similar to Scanpy in Python. Users can directly work with scRNA-seq data in Julia and perform operations without relying solely on shell commands for output. Key changes include:

Major Updates:

• Interactive Usage: scLENS can now be fully utilized in the Julia environment, allowing users to process data, generate embeddings, and plot results interactively.
• Device Selection: Automatic selection of GPU or CPU for processing based on system availability.
• Enhanced Data Handling: Read compressed CSV files and preprocess data with custom gene dictionaries for more flexible input management.
• UMAP and QC: Perform quality control (QC), generate UMAP embeddings, and plot results directly within Julia.
• File Export: Easily save PCA/UMAP results as CSV files, or export the processed data as AnnData for use with Scanpy.

Full Changelog: v1.0.0...v2.0.0

v1.0.0

v1.0.0