coverage is added to the nucleotide csv file.

This release of MinVar includes an update to add coverage information for each site in

Added

• coverage information for each site is added to the merged_mutations_nt.csv file.
• Add reference positions to mutations file mutations_nt_pos_ref_aa.csv, to be used for runControl package.

Fixed

• Update drug resistance interpretation table.
• Fix headers of reports

Ambiguity score is computed on PRRT up to aa 335. Few bugfixes.

Changed

• Ambiguity score is now computed on PRRT up to aa 335.

Fixed

• Bugfix: unannotated mutations were not always reported in the tables (issue medvir#25).
• Reference and consensus protein sequences having the same end would make annotate.py fail, fixed.