Advanced Bioinformatics

Table of Contents

• Class 2: Introduction to the Linux command line, NGS data formats, read mapping and alignments. Download in PDF.
• Hands On: Transcriptome Assembly: Case study of bacteria Listeria monocytogenes. Download in PDF.
• Docker Image
• Author
• Contributing

Run our Docker Image

• osvaldogc/ufv:2.0: Docker image with Hands On packages already installed. Images can be pulled via docker pull osvaldogc/ufv:2.0. Detailed instructions here.

Running locally

Remember that all the packages required to run the analysis are already installed in our Docker image.

Follow this guide if you want to run your analysis locally.

Author

Fernando Pozo – @fpozoca – [email protected]

Bioinformatics Unit - @BU_CNIO Spanish National Cancer Research Centre (CNIO)

Distributed under the GNU General Public License. See LICENSE for more information.

https://github.com/fpozoca

Contributing

1. Fork it (https://github.com/fpozoc/advanced_bioinformatics).
2. Create your feature branch (git checkout -b feature/fooBar).
3. Commit your changes (git commit -am 'Add some fooBar').
4. Push to the branch (git push origin feature/fooBar).
5. Create a new Pull Request.