Merge pull request #35 from MPUSP/dev

fix: minor issues
MPUSP · Jul 24, 2024 · 4ab8e6a · 4ab8e6a
2 parents 5d78ac6 + 8b7b5bb
commit 4ab8e6a
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,7 +1,7 @@
 results/**
 resources/**
 logs/**
-test/**
+.test/**
 .snakemake
 .snakemake/**
 .vscode/**
diff --git a/workflow/notebooks/report.Rmd b/workflow/notebooks/report.Rmd
@@ -577,7 +577,7 @@ draw_guide_target <- function(df, n_examples) {
         "Note that genes on the '-' strand are shown as reverse-complement"
       )
     ) +
-    custom_theme(legend.position = 0) +
+    custom_theme(legend.position = "none") +
     scale_color_manual(values = custom_colors[1:2]) +
     theme(axis.text.y = element_blank(), axis.ticks.y = element_blank())
 }
@@ -611,7 +611,7 @@ draw_guide_intergenic <- function(
       title = paste0("Guide RNA location per chromosome (max. ", n_examples, "shown)"),
       subtitle = "Colored arrows: guide RNAs, gray lines: annotated genes."
     ) +
-    custom_theme(legend.position = 0) +
+    custom_theme(legend.position = "none") +
     scale_color_manual(values = custom_colors[1:2]) +
     theme(axis.text.y = element_blank(), axis.ticks.y = element_blank())
 }

diff --git a/workflow/scripts/design_guides.R b/workflow/scripts/design_guides.R
@@ -16,7 +16,7 @@ suppressPackageStartupMessages({
 
 # CONFIGURATION
 # ------------------------------
-source("workflow/scripts/utilities.R")
+source(paste0(snakemake@scriptdir, "/utilities.R"))
 sm_params <- snakemake@params[[1]]
 max_cores <- snakemake@params[[2]]
 for (param in names(sm_params)) {

diff --git a/workflow/scripts/filter_guides.R b/workflow/scripts/filter_guides.R
@@ -12,7 +12,7 @@ suppressPackageStartupMessages({
 
 # CONFIGURATION
 # ------------------------------
-source("workflow/scripts/utilities.R")
+source(paste0(snakemake@scriptdir, "/utilities.R"))
 sm_params <- snakemake@params[[1]]
 max_cores <- snakemake@params[[2]]
 for (param in names(sm_params)) {