fix: removed conda default channel from envs, closes #38

MPUSP · Sep 20, 2024 · 0362a0b · 0362a0b
1 parent d26fc02
commit 0362a0b
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Showing 6 changed files with 3 additions and 7 deletions.
diff --git a/workflow/envs/basic.yml b/workflow/envs/basic.yml
@@ -1,6 +1,5 @@
 name: basic
 channels:
   - conda-forge
-  - defaults
 dependencies:
   - python=3.9
diff --git a/workflow/envs/bowtie_index.yml b/workflow/envs/bowtie_index.yml
@@ -1,6 +1,6 @@
 name: bowtie_index
 channels:
+  - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bowtie=1.3.1
diff --git a/workflow/envs/bsgenome.yml b/workflow/envs/bsgenome.yml
@@ -2,7 +2,6 @@ name: bsgenome
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - r-base 4.3.1
   - r-tidyverse=2.0.0

diff --git a/workflow/envs/design_guides.yml b/workflow/envs/design_guides.yml
@@ -2,7 +2,6 @@ name: design_guides
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - r-base 4.3.1
   - r-tidyverse=2.0.0

diff --git a/workflow/envs/get_genome.yml b/workflow/envs/get_genome.yml
@@ -1,7 +1,6 @@
 name: get_genome
 channels:
   - conda-forge
-  - defaults
   - bioconda
 dependencies:
   - python=3.9

diff --git a/workflow/envs/report.yml b/workflow/envs/report.yml
@@ -1,9 +1,9 @@
 name: report
 channels:
   - conda-forge
-  - defaults
 dependencies:
-  - weasyprint=58.0
+  - python=3.9
+  - weasyprint=62.3
   - r-base 4.3.1
   - r-essentials=4.3
   - r-tidyverse=2.0.0