v1.4.0

1.4.0 (2025-02-02)

Features

• updated github actions workflow. checking formatting of yaml files using prettier (f3b63b7)

Bug Fixes

• changed license to MIT (e9985f9)
• corrected ending of yml file (4cc8311)

v1.3.0

1.3.0 (2025-01-22)

Features

• updated github actions workflows (9527b3a)

Bug Fixes

• added fetch depth statement (153f49a)
• reformat conda inject statement (cbf8db2)

v1.2.0

1.2.0 (2024-11-07)

Features

• added global env directive, closes #11 (f9dd861)
• handling of conditions and replicates in output and report; closes #16 (3b868c4)

Bug Fixes

• adjusted installation instructions for conda/mamba in readme, closes #14 (81285c9)

v1.1.0

1.1.0 (2024-09-27)

Features

• added complete list of parameters + readme for wf-catalog; closes #5 (d9b10b8)
• added schemas for sample sheet and config files (5b69264)
• added wf catalog config file (9441f4c)
• link to default riboseq protocol(s) (6191dce)

Bug Fixes

• corrected path for GH actions status badge (9375350)
• removed defaults channel from conda envs; closes #10 (2d07dd8)
• removed notes about modules; closes #12 (eded36d)
• typos in report (b5b609f)

v1.0.0

1.0.0 (2024-08-02)

Features

• adapted read shifting to pipeline, make bam export default (f29761d)
• added description to run examples (4b31486)
• added report for workflow results (31bb75a)
• added rule to calculate basic gene-wise statistics (18e316c)
• added wf overview figure, closes #4 (dcc8a1a)
• bring genome work on par with current state of small-orfs pipe (8bd026c)
• prepared wf to run test data; removed unused conf options; snakefmt + linting (d351622)

Bug Fixes

• added dev branch to gh actions workflow (051de2c)
• added missing channels for env definitions (5184b38)
• added missing options for gff source type (2ee01d5)
• bug in PCA plotting vars (bfa3cd6)
• changed protocol name (6bc4dc6)
• changed protocol name in README (1702026)
• cleaned plot_mapping_length script and added logging output, closes #3 (5fb31af)
• make fastqc run quietly (no progress printed to terminal) (930b55c)
• remove sORF related steps (1c2ff00)
• removed run_workflow.sh script. (0742005)
• removed unnecessary params (b357ab9)
• snakefmt error (a4dd408)
• updated release please workflow (b71b2e4)