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Add hedis config #58

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sarahmcmorgan wants to merge 5 commits into from
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Add hedis config #58

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88b3850
Update fhir resource package version
sarahmcmorgan Feb 24, 2025
7b698f0
Add local test directory to gitignore
sarahmcmorgan Feb 24, 2025
95bb897
Add demo directory to gitignore
sarahmcmorgan Feb 24, 2025
a030516
Add HEDIS meta elements
sarahmcmorgan Feb 24, 2025
6108bfd
Remove meta extensions not needed for HEDIS
sarahmcmorgan Feb 24, 2025
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2 changes: 2 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -48,3 +48,5 @@ virtualenv/
notebooks/
.ipynb_checkpoints
.history/
local_test/
demo/
2 changes: 1 addition & 1 deletion setup.cfg
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Expand Up @@ -21,7 +21,7 @@ classifiers =
[options]
install_requires =
deepdiff >=5.8, <6.0
fhir.resources >=6.4, <7.0
fhir.resources >=6.4, <7.1.0
numpy <2
pandas >=1.4 ,<1.5
pydantic >=1.9, <2.0
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34 changes: 12 additions & 22 deletions src/linuxforhealth/csvtofhir/fhirrs/meta.py
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Expand Up @@ -13,35 +13,25 @@ def create_meta(
) -> Meta:
meta: Meta = Meta.construct()
meta.extension = []

ext_tenant_id: Extension = Extension.construct(url=ExtensionUrl.META_TENANT_ID_EXTENSION_URL)
ext_tenant_id.valueString = general_directives.get("tenantId")
meta.extension.append(ext_tenant_id)

ext_source_file_id: Extension = Extension.construct(
url=ExtensionUrl.META_SOURCE_FILE_ID_EXTENSION_URL
)
ext_source_file_id.valueString = file_name
meta.extension.append(ext_source_file_id)

ext_source_event_trigger: Extension = Extension.construct(
url=ExtensionUrl.META_SOURCE_EVENT_TRIGGER_EXTENSION_URL
)
ext_source_event_trigger.valueCodeableConcept = CodeableConcept.construct(
text=mapped_resource_type
)
meta.extension.append(ext_source_event_trigger)
meta.tag = []

ext_process_timestamp: Extension = Extension.construct(
url=ExtensionUrl.META_PROCESS_TIMESTAMP_EXTENSION_URL
)
ext_process_timestamp.valueDateTime = datetime.utcnow().replace(tzinfo=timezone.utc).isoformat()
meta.extension.append(ext_process_timestamp)

ext_source_record_type: Extension = Extension.construct(
url=ExtensionUrl.META_SOURCE_RECORD_TYPE_EXTENSION_URL
# HEDIS profile URL logic based on resource type
if mapped_resource_type == "Patient":
meta.profile = [
"https://ncqa.org/fhir/StructureDefinition/hedis-core-patient"
]

tag_hedis_data_source = fhir_utils.get_coding(
"https://ncqa.org/fhir/CodeSystem/hedis-data-source",
"administrative",
"Administrative"
)
ext_source_record_type.valueCodeableConcept = fhir_utils.get_codeable_concept(None, None, None, "csv")
meta.extension.append(ext_source_record_type)
meta.tag.append(tag_hedis_data_source)

return meta
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