Update sim funcs examples

docs/examples/gen_funcs.rst

@@ -114,7 +114,6 @@ Modeling and Approximation
   Distributed evolutionary algorithms (*community example*)
 
 
-
 .. _libEnsemble Community Repository: https://github.com/Libensemble/libe-community-examples
 
 .. _APOSMM: https://link.springer.com/article/10.1007/s12532-017-0131-4

docs/examples/sim_funcs.rst

@@ -13,43 +13,40 @@ function launching tasks, see the
 .. role:: underline
     :class: underline
 
-six_hump_camel
---------------
-.. automodule:: six_hump_camel
-  :members: six_hump_camel_simple, persistent_six_hump_camel
-  :undoc-members:
-
-.. dropdown:: :underline:`six_hump_camel.py`
-
-   .. literalinclude:: ../../libensemble/sim_funcs/six_hump_camel.py
-      :language: python
-      :linenos:
-
-noisy_vector_mapping
---------------------
-.. automodule:: noisy_vector_mapping
-  :members:
-  :undoc-members:
-
-.. dropdown:: :underline:`noisy_vector_mapping.py`
-
-   .. literalinclude:: ../../libensemble/sim_funcs/noisy_vector_mapping.py
-      :language: python
-      :linenos:
-
-borehole
---------
-.. automodule:: borehole
-  :members:
-  :undoc-members:
-
-executor_hworld
----------------
-.. automodule:: executor_hworld
-  :members:
-
-.. dropdown:: :underline:`executor_hworld.py`
-
-   .. literalinclude:: ../../libensemble/sim_funcs/executor_hworld.py
-      :language: python
-      :linenos:
+
+Simple simulation functions
+---------------------------
+
+.. toctree::
+   :maxdepth: 1
+
+   sim_funcs/simple_sim
+   sim_funcs/borehole
+   sim_funcs/borehole_kills
+   sim_funcs/chwirut1
+   sim_funcs/inverse_bayes
+   sim_funcs/noisy_vector_mapping
+   sim_funcs/periodic_func
+   sim_funcs/rosenbrock
+   sim_funcs/six_hump_camel
+   sim_funcs/surmise_test_function
+
+
+Functions with CPU/GPU allocation
+---------------------------------
+
+.. toctree::
+   :maxdepth: 1
+
+   sim_funcs/var_resources
+   sim_funcs/forces_simf
+
+Special simulation functions
+----------------------------
+
+.. toctree::
+   :maxdepth: 1
+
+   sim_funcs/mock_sim
+
+

docs/examples/sim_funcs/borehole.rst

@@ -0,0 +1,16 @@
+borehole
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: borehole
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`borehole.py`
+
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/borehole.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/borehole_kills.rst

@@ -0,0 +1,16 @@
+borehole_kills
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: borehole_kills
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`borehole_kills.py`
+
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/borehole_kills.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/chwirut1.rst

@@ -0,0 +1,15 @@
+chwirut1
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: chwirut1
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`chwirut1.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/chwirut1.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/forces_simf.rst

@@ -0,0 +1,15 @@
+forces_simf
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: forces_simf
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`forces_simf.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/forces_simf.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/inverse_bayes.rst

@@ -0,0 +1,15 @@
+inverse_bayes
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: inverse_bayes
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`inverse_bayes.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/inverse_bayes.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/mock_sim.rst

@@ -0,0 +1,16 @@
+mock_sim (re-run using history file)
+------------------------------------
+
+.. role:: underline
+   :class: underline
+
+.. automodule:: mock_sim
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`mock_sim.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/mock_sim.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/noisy_vector_mapping.rst

@@ -0,0 +1,15 @@
+noisy_vector_mapping
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: noisy_vector_mapping
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`noisy_vector_mapping.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/noisy_vector_mapping.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/periodic_func.rst

@@ -0,0 +1,15 @@
+periodic_func
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: periodic_func
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`periodic_func.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/periodic_func.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/rosenbrock.rst

@@ -0,0 +1,15 @@
+rosenbrock
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: rosenbrock
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`rosenbrock.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/rosenbrock.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/simple_sim.rst

@@ -0,0 +1,15 @@
+simple_sim
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: simple_sim
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`simple_sim.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/simple_sim.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/six_hump_camel.rst

@@ -0,0 +1,15 @@
+six_hump_camel
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: six_hump_camel
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`six_hump_camel.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/six_hump_camel.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/surmise_test_function.rst

@@ -0,0 +1,15 @@
+surmise_test_function
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: surmise_test_function
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`surmise_test_function.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/surmise_test_function.py
+      :language: python
+      :linenos:

docs/examples/sim_funcs/var_resources.rst

@@ -0,0 +1,15 @@
+var_resources
+--------------
+.. role:: underline
+   :class: underline
+
+.. automodule:: var_resources
+   :members:
+   :undoc-members:
+
+.. dropdown:: :underline:`var_resources.py`
+
+
+   .. literalinclude:: ../../../libensemble/sim_funcs/var_resources.py
+      :language: python
+      :linenos: