Add user-defined queries to codebase

onprc_ehr/resources/queries/onprc_ehr/vet_assignment_invalidRule.query.xml

@@ -0,0 +1,9 @@
+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="vet_assignment_InvalidRule" tableDbType="NOT_IN_DB">
+                <tableTitle>Invalid Vet Assignment Rules</tableTitle>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/onprc_ehr/vet_assignment_invalidRule.sql

@@ -0,0 +1,39 @@
+/*
+ * Copyright (c) 2014-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
+
+WITH ruleData AS (
+    SELECT
+        rowid,
+        CASE
+            WHEN (userId IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Project IS NULL AND Protocol IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Project IS NULL AND Protocol IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Protocol IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Protocol IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Protocol IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Protocol IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Area IS NULL AND Room IS NULL AND Protocol IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Project IS NOT NULL AND Area IS NULL AND Room IS NULL AND Protocol IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Project IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Project IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Project IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Project IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Area IS NULL AND Room IS NULL AND Project IS NULL AND Priority = true) THEN 1
+            WHEN (userId IS NOT NULL AND Protocol.DisplayName IS NOT NULL AND Area IS NULL AND Room IS NULL AND Project IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Room IS NOT NULL AND Area IS NULL AND Protocol IS NULL AND Project IS NULL AND Priority = false) THEN 1
+            WHEN (userId IS NOT NULL AND Area IS NOT NULL AND Room IS NULL AND Protocol IS NULL AND Project IS NULL AND Priority = false) THEN 1
+            ELSE 0
+            END AS valid
+    FROM onprc_ehr.vet_assignment
+)
+SELECT
+    userId,
+    project,
+    protocol,
+    area,
+    room,
+    priority
+FROM onprc_ehr.vet_assignment
+WHERE rowid IN (SELECT rowid FROM ruleData WHERE valid = 0)

onprc_ehr/resources/queries/study/demographicsAssignedVet.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2014-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 /*
 study.demographicsAssignedVet
 

onprc_ehr/resources/queries/study/observationsLinkedToAnotherAnimalsCase.query.xml

@@ -0,0 +1,9 @@
+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="observationsLinkedToAnotherAnimalsCase" tableDbType="NOT_IN_DB">
+                <tableTitle>Observations Linked to Another Animal's Case</tableTitle>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/study/observationsLinkedToAnotherAnimalsCase.sql

@@ -0,0 +1,113 @@
+WITH Observations AS (
+    SELECT
+        o.Id,
+        o.caseid,
+        o.caseid.id.id        AS linkid,
+        o.caseid.caseNo       AS linkCaseNo,
+        o.caseid._key         AS linkCaseKey,
+        o.caseid.date         AS linkCaseDate,
+        o.taskid,
+        o.performedby,
+        o.date,
+        o.created,
+
+        NULLIF(o.category, 'Observations') AS category,
+        NULLIF(o.area, 'N/A')               AS area,
+
+        CASE
+            WHEN o.category IS NULL AND o.observation IS NOT NULL
+                THEN o.observation
+            WHEN o.category IS NOT NULL AND o.observation IS NULL
+                THEN o.category
+            WHEN o.category IS NOT NULL AND o.area IS NULL
+                THEN (o.category || ': ' || o.observation)
+            WHEN o.category IS NOT NULL AND o.area IS NOT NULL
+                THEN (o.category || ': ' || o.area || ', ' || o.observation)
+            ELSE NULL
+            END
+            ||
+        COALESCE(
+                CASE
+                    WHEN o.remark IS NOT NULL AND o.observation IS NOT NULL
+                        THEN ('. ' || o.remark)
+                    ELSE o.remark
+                    END,
+                ''
+        ) AS observation_string
+    FROM study.clinical_observations o
+    WHERE
+        o.caseid IS NOT NULL
+      AND o.category NOT IN ('Vet Review', 'Reviewed')
+      AND o.id <> o.caseid.id.id   -- MUCH faster than NOT LIKE
+),
+
+    AggregatedObservations AS (
+        SELECT
+            Id,
+            caseid,
+            linkid,
+            linkCaseNo,
+            linkCaseKey,
+            linkCaseDate,
+            taskid,
+            performedby,
+    date,
+    MIN(created) AS created,
+    GROUP_CONCAT(
+    CAST(observation_string AS VARCHAR(1000)),
+    '; '
+    ) AS observations
+FROM Observations
+GROUP BY
+    Id,
+    caseid,
+    linkid,
+    linkCaseNo,
+    linkCaseKey,
+    linkCaseDate,
+    taskid,
+    performedby,
+    date
+    ),
+
+    AnimalCases AS (
+SELECT
+    ao.*,
+    c.category,
+    c.caseNo,
+    c.objectId AS key
+FROM AggregatedObservations ao
+    LEFT JOIN study.cases c
+ON c.Id = ao.Id
+    AND ao.created >= c.date
+    AND (ao.created <= c.enddate OR c.enddate IS NULL)
+    )
+
+SELECT
+    Id           AS ObsAnimalId,
+    date,
+    created,
+    observations,
+    taskid,
+    performedby,
+    linkid       AS LinkedCaseAnimalId,
+    caseid       AS linkedCaseCategory,
+    linkCaseNo,
+    linkCaseKey,
+    linkCaseDate,
+    GROUP_CONCAT(category, ', ') AS openCasesAtObsCreation,
+    GROUP_CONCAT(caseNo, ', ')   AS openCaseNosAtObsCreation,
+    GROUP_CONCAT(key, ', ')      AS openCaseKeysAtObsCreation
+FROM AnimalCases
+GROUP BY
+    Id,
+    date,
+    created,
+    observations,
+    taskid,
+    performedby,
+    linkid,
+    caseid,
+    linkCaseNo,
+    linkCaseKey,
+    linkCaseDate

onprc_ehr/resources/queries/study/vetAssignment_multipleVets.query.xml

@@ -0,0 +1,9 @@
+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="vetAssignment_multipleVets" tableDbType="NOT_IN_DB">
+                <tableTitle>NHPs With Multiple Assigned Vets</tableTitle>
+            </table>
+        </tables>
+    </metadata>
+</query>

onprc_ehr/resources/queries/study/vetAssignment_multipleVets.sql

@@ -0,0 +1,25 @@
+/*
+ * Copyright (c) 2014-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
+
+WITH assignmentData AS (
+    SELECT DISTINCT
+        Id,
+        Area,
+        Room,
+        CASE
+            WHEN AssignmentType = 'Open Case' THEN (AssignedVet || ', Open Case: ' || COALESCE(MasterProblems, ''))
+            ELSE (AssignedVet || ', ' || AssignmentType)
+            END AS assignment
+    FROM demographicsAssignedVet
+)
+SELECT
+    Id,
+    Area,
+    Room,
+    GROUP_CONCAT(assignment, chr(10)) AS Vets
+FROM assignmentData
+GROUP BY Id, Area, Room
+HAVING COUNT(*) > 1

onprc_ehr/resources/queries/study/vetassignment_filter.sql

@@ -1,3 +1,8 @@
+/*
+ * Copyright (c) 2014-2026 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
+ */
 /*
 study.vetAssignment_filter