Skip to content
@IARCbioinfo

IARC bioinformatics platform

International Agency for Research on Cancer bioinformatics platform

Pinned Loading

  1. IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    49 9

  2. needlestack Public

    Multi-sample somatic variant caller

    R 49 15

  3. mutspec Public

    Mutation Spectra Analysis

    Perl 10 2

  4. alignment-nf Public

    Whole Exome/Whole Genome Sequencing alignment pipeline

    Nextflow 28 14

  5. RNAseq-nf Public

    RNAseq analysis pipeline

    HTML 24 9

  6. mutect-nf Public

    Mutect pipeline with Nextflow

    Nextflow 9 7

Repositories

Showing 10 of 118 repositories
  • methylkey Public
    R 2 3 0 0 Updated Mar 7, 2025
  • MS_SVA Public

    Repository with code used to produce the figures from Morrison et al. doi.org/10.1101/2023.11.23.23298821

    HTML 0 GPL-3.0 0 0 0 Updated Mar 3, 2025
  • MS_lungNENomics Public

    Repository with scripts from the lungNENomics manuscript

    HTML 0 GPL-3.0 0 0 0 Updated Feb 24, 2025
  • MESOMICS_data Public

    Data and scripts associated with MESOMICS paper and data note

    R 3 GPL-3.0 2 1 0 Updated Feb 24, 2025
  • SComatic-nf Public

    Nextflow pipeline to run somatic alteration calling from single-cell data using SComatic

    Nextflow 1 GPL-3.0 1 4 0 Updated Feb 17, 2025
  • singlecell_scripts Public

    Python scripts for MESOMICS2 single-cell analyses

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 10, 2025
  • IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    49 GPL-3.0 9 0 0 Updated Jan 9, 2025
  • EPIC-RareCancers Public
    R 0 0 0 0 Updated Dec 12, 2024
  • LNENBarlowTwins Public
    Jupyter Notebook 0 0 0 0 Updated Dec 7, 2024
  • medical_genomics_course Public

    Material for medical genomics course

    R 8 GPL-3.0 5 1 0 Updated Nov 27, 2024
View all repositories